Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Reverse (-)

31925657 .. 31927317

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1250000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCGCTAGCTCGGATTTCGGTTGAAGATTGCTGCACTGACTGCTCTGGAGATTGTCTCTCAGTGGCAATACCATGTGCATGTGCTCGTGAAACCGGTGGAGAGTTTGTGTACACAGCACAAGGCCTGCTTAAAGAAGATTTTTTAACAGCTTGTGTCAAGGAACCGGAGGCGCGCAACTTTGTTTATTGTCAAGACTGTCCCAATGAGAGGTCTAAGAACGAGTACTACCCCGAAAAATGCAAAGGTCACCACATCAGGAAGTTTAATAAAGAATGCTGGAGAAAATGTGGATGTGACTTGTCGTGTGGAAATCGGGTGTTTGTGACTCCTGAAGGGAAAGGCTGGAGTGTTAGGATACTAGAGGTCTTGCAGAATGGGGCATTTGTCTGTGAATATGTTGGGGAGATACTGAACAACAACGAATTGTACGAGAGAAATACCCAAAGCTGGGAGCTAAGAGACATACCTACCCCGTATTGCTCAGAGCAAATTTTGAAGGATGACGATGCCCTTTGTCTTGATGAAACATCTCATGGAAATGTTGCCAGATTTATCAATCATAGTTGCTCTGATGCAAATTTGATTGATATCCCAGTTCAAGTGGAGACCCCTGACCGTCACTATTATCACATACGGTTTGCATTTTTTGCTACGAGGAAAGTGAACGCTTTTGAAGAGCTGACATGGGATTATGGTATTGACTTTGATAGAGGTCGCACTTGGTGCGATGCCAAGTGCCTTCGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

251

Amino Acids

28.7

Weight (kDa)

5.08

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	115 - 233	5.5e-16	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	492, 580
AcuI	CTGAAG	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	726
AfaI	GTAC	3 cut(s)	113, 227, 431
AfiI	CCNNNNNNNGG	3 cut(s)	210, 450, 451
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	4 cut(s)	26, 499, 602, 677
AluBI	AGCT	5 cut(s)	11, 152, 450, 457, 682
AluI	AGCT	5 cut(s)	11, 152, 450, 457, 682
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	62, 456, 602
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	492, 580
AsiGI	ACCGGT	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	175, 177
AsuHPI	GGTGA	1 cut(s)	242
AsuNHI	GCTAGC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	62, 456, 602
BfaI	CTAG	2 cut(s)	8, 362
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	3 cut(s)	499, 565, 721
BmtI	GCTAGC	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	590
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpmI	CTGGAG	3 cut(s)	69, 301, 367
BsaBI	GATNNNNATC	1 cut(s)	590
BsaI	GGTCTC	1 cut(s)	602
BsaWI	WCCGGW	2 cut(s)	95, 166
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 274, 304
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 450, 451
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	596
Bse8I	GATNNNNATC	1 cut(s)	590
BseGI	GGATG	2 cut(s)	299, 508
BseJI	GATNNNNATC	1 cut(s)	590
BseLI	CCNNNNNNNGG	3 cut(s)	210, 450, 451
BseMII	CTCAG	2 cut(s)	75, 498
BseNI	ACTGG	1 cut(s)	596
BsePI	GCGCGC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	96, 167
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	210, 450, 451
BsmAI	GTCTC	3 cut(s)	62, 456, 602
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	111
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	74, 497
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	165
BspOI	GCTAGC	1 cut(s)	11
BspQI	GCTCTTC	1 cut(s)	672
BspTNI	GGTCTC	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	596
BssAI	RCCGGY	1 cut(s)	95
BssHII	GCGCGC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	200, 620, 639
Bst6I	CTCTTC	1 cut(s)	672
BstAPI	GCANNNNNTGC	3 cut(s)	42, 650, 726
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	9, 128, 175
BstDEI	CTNAG	4 cut(s)	61, 216, 458, 484
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	299, 508
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	2 cut(s)	175, 177
BstMAI	GTCTC	3 cut(s)	62, 456, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 650, 726
BstNSI	RCATGY	1 cut(s)	84
BstPI	GGTNACC	1 cut(s)	248
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	299, 508
BtsIMutI	CAGTG	2 cut(s)	36, 69
Cac8I	GCNNGC	3 cut(s)	9, 128, 175
CfoI	GCGC	2 cut(s)	175, 177
Cfr10I	RCCGGY	1 cut(s)	95
Csp6I	GTAC	3 cut(s)	112, 226, 430
CspAI	ACCGGT	1 cut(s)	95
CviAII	CATG	5 cut(s)	75, 81, 536, 687, 750
CviJI	RGCY	7 cut(s)	11, 126, 152, 345, 450, 457, 682
CviKI_1	RGCY	7 cut(s)	11, 126, 152, 345, 450, 457, 682
CviQI	GTAC	3 cut(s)	112, 226, 430
DdeI	CTNAG	4 cut(s)	61, 216, 458, 484
DraIII	CACNNNGTG	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoRV	GATATC	1 cut(s)	592
FaeI	CATG	5 cut(s)	78, 84, 539, 690, 753
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	5 cut(s)	74, 80, 535, 686, 749
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	306, 515
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	2 cut(s)	8, 362
GlaI	GCGC	2 cut(s)	174, 176
GluI	GCNGC	1 cut(s)	34
GsaI	CCCAGC	1 cut(s)	454
GsuI	CTGGAG	3 cut(s)	69, 301, 367
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	96, 167
HhaI	GCGC	2 cut(s)	175, 177
Hin1II	CATG	5 cut(s)	78, 84, 539, 690, 753
Hin6I	GCGC	2 cut(s)	173, 175
HinP1I	GCGC	2 cut(s)	173, 175
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	96, 167
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	112, 114, 667
Hpy188I	TCNGA	3 cut(s)	15, 487, 574
Hpy188III	TCNNGA	6 cut(s)	48, 89, 194, 259, 332, 521
Hpy8I	GTNNAC	3 cut(s)	112, 114, 667
HpyAV	CCTTC	3 cut(s)	329, 493, 752
HpyCH4III	ACNGT	3 cut(s)	200, 620, 639
HpyCH4V	TGCA	6 cut(s)	36, 80, 243, 373, 578, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 650, 726
HpyF3I	CTNAG	4 cut(s)	61, 216, 458, 484
Hsp92II	CATG	5 cut(s)	78, 84, 539, 690, 753
HspAI	GCGC	2 cut(s)	173, 175
LguI	GCTCTTC	1 cut(s)	672
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	3 cut(s)	499, 565, 721
MaeI	CTAG	2 cut(s)	8, 362
MaeIII	GTNAC	4 cut(s)	248, 296, 325, 620
MboII	GAAGA	3 cut(s)	38, 149, 689
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	425, 492, 580
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	163, 204, 358, 651, 707
MseI	TTAA	3 cut(s)	132, 146, 267
MslI	CAYNNNNRTG	2 cut(s)	79, 540
MspI	CCGG	2 cut(s)	96, 167
Mva1269I	GAATGC	1 cut(s)	281
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	42, 650, 726
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	78, 84, 539, 690, 753
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	4 cut(s)	248, 296, 325, 620
NspI	RCATGY	1 cut(s)	84
PauI	GCGCGC	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	1 cut(s)	165
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PteI	GCGCGC	1 cut(s)	173
RsaI	GTAC	3 cut(s)	113, 227, 431
RsaNI	GTAC	3 cut(s)	112, 226, 430
RseI	CAYNNNNRTG	2 cut(s)	79, 540
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	3 cut(s)	132, 146, 267
SatI	GCNGC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	3 cut(s)	499, 565, 721
SmiMI	CAYNNNNRTG	2 cut(s)	79, 540
Sse9I	AATT	3 cut(s)	425, 492, 580
SseBI	AGGCCT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	8, 362
StuI	AGGCCT	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	200, 620, 639
TasI	AATT	3 cut(s)	425, 492, 580
TatI	WGTACW	2 cut(s)	111, 225
Tru1I	TTAA	3 cut(s)	132, 146, 267
Tru9I	TTAA	3 cut(s)	132, 146, 267
TscAI	CASTG	2 cut(s)	43, 69
TseFI	GTSAC	4 cut(s)	248, 296, 325, 620
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	4 cut(s)	248, 296, 325, 620
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	2 cut(s)	43, 69
XapI	RAATTY	2 cut(s)	492, 580
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	2 cut(s)	8, 362
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.