Rh7AG399400

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000439
Physical Location & Seq
Reverse (-)
52469216 .. 52475852
6637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG399400.1

Sequence Viewer

Length: 2589 bp
ATGTGGCCGAAAGGTAGCAAAATTGCAAAGGCCTGTCAGGCAATGAAAGAATTTGGCATTGCTGAAGTCCAAACAAAGGCTGCGCTGAAGCAACTTCTGGAAGTGTATGAAAATAACTGGGATTTCATTGAAGCTGATGATTACAAAGAACTCTTTAATTTTATTGTACCAGATAACAAGAAGCCAAATGAAGAGAGAGTGCAGCCCAAGGTAAAAGGCGCTTTGATGCGTGAATCAAAGAGAGTGCATTCTAAGAACAAACAAGCTCCATCATATGATACAACTGAAGTTATTGAGCGTCCAACCAAGAGATATTGCACCAGGCAACAGAAAAATCAGCCATTATCTTGCACCAAATACTCTGAATCAAGCTTGAGAAGAACTCCACCAGAAAGTATGCATATTAAGTTTGATGAAGAATCTGAGGAATCTGAGGAGTGGCAGCCATTAGTGAGAAAACCTCGACAAAGGCACACAAATCCTCAAGAAGTTTGGGTTGCGGATAATAAGGTTGGTCCTGTGCCTGATGACTGTCCAGAACCTGATATAAGTCCGAATCTTATATGTGAAGGTAACTTCTCAGATTCTGATGGTTGTGATGTTGGTGAAGATGTGATGAAGTACCTGCAACTGAAATCTAGGAACAAACAACCTCCATCATATGATACACCTGAAGTCATTGAGTGGCAAACCAAGAGATTTCGCACCAGGCAACAGAAAAATCAGCCTTCATCTCTTACCAAATACTCTGAATCAAGCTTGAGAAGAACTCCAGGAAAAATGCATGTGAAGTTTGATGAAGAATCTGAGGAATCTGAGGACTCGCAGCCATTAGTGAGAAAACCTCGACAAAGACACATAAATCCACAAGAAGTTTGGGTCACTAGGAATAACATTGATGATGTGCTTGATGACTGTCCAGAACTTGAAATAGGTCCCAGTCCTGTATGTGAAGGTAGCTTAACAAATTCTGATGGTTGTGATGTTGATGAAGATGTGGTGAAGTACCTGCCAGTGGAATTATTGACTGAGAGCAATAGTGTGAGTGTCTCAGATTGGTCTCAGACTGATGTTGCATCTTCTTCCCCAGTGAAAAATCCTTTGATTTCTAGCTCTTCGCGAAAGTCTGGTTTTGATCTTCCTAACGGTGAAGTATCCCAAGAAATGATGGAAGAGAAATGCATAAAATCATATGGGACTGGAGAATGCCGCTCCATGGTGATAGTGACTAATGTCACTGAGAATAAGCCAGAATTAATAACTTCTAATGAACAAGATCAAGGCAGTAAGTGCAGTGGTCTGGGTTCTTTTAACGAGCTATTTGTTGATCAGAATCTTATCAAGCCTATACGTATACCTAATTATAGAGCGTTGGGTAGTTTTGAAGGTCTTTGCAGCTTAATTGGTATTAAAGTTAAGGATATTGAGAACATCTGTGGGGAAAGTGCAAAGAGATCAAGGGTTTCCAAAGGTCAAAAAACATCACAATTATGCAAGGTGGAAGCCGGGCATAACTACCATTCTTCACTTAGAGTTACAGAGTCTGCATTTAACATTGATGACATAACGAGAGGTGAAGAAAGATTTAAGATTTCCTTGGAAAATGGAAGAAAAGCCGAGTTGCCAACCTTTTCTTACATCGCGCAGAATTTAATTTATAATAAGGCCTCTGTGAGATTTGCACTTGCTAATATATCCGATGAGGATTGCTGTTCAAAATGTTATGGGGACTGTCTTACATCATCAATTCCTTGTCTTTGTGTGATTGCCAATGGGGGTGAATGTGCTTACAAGCCAGGAGGATTGGTCAAGGAGAAGTTTCTGGAAGAATGTATATCTATGAAGCGTGAGCCTGAAAAGCACCCATACTTCTACTGTAAAAAGTGCCCGCTAGTAAGGTCAGAGAATGCGAAGAGTTCTGTGGCATGCAAGGGACATTTGTTACGGAGGTTTATAAAGGAATGCTCTTATAAATGCGGTTGTAACAGGAGCTGTGGAAACCGGATTGTACAGAAAGGCATTGCTGTGAAATTGCAGGTATTTTTGACACCCGAAGGGAAAGGGTGGGGTCTAAGAACACTGGAAGCATTGCCAAGAGGGGCTTTTGTTTGTGAATATGTTGGAGAGATAGTAACCATCGACGAACTACGTGAGCGAAGTGTGCTGAGTATTGGTAAAGAGCATACCTACCCAGTACTACTAGATGCAGACTGGGGTTCACAGGATGTGTTGAAAGATGAAAAGGCTCTATGCTTGGACACTACAGTCTACGGAAATGTTGCAAGATTCATTAACCACAGATGTTCTGATGCTACATTGGTCGAGATCCCAGTTGAAGTGGAGACCCCAGATCGTCACTATTATCATGTTGCCCTTTTCACAACAAGGGATGTTGGTGCTATGGAGGAGCTCACTTGGGACTATGGCATTTCCTTTCATGACCATAATTATCCTGTGAAGCATTTCCGATGTCTCTGTGGAAGTCCATTATGTCGTGACCGCAAAGATATAAAACGCAAAATTACATATGTCCGACGACGGCGTAAGGTGAAGTTCCAAAAAAAGATAATGTCTCTTACTAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

862

Amino Acids

97.94

Weight (kDa)

6.95

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 6 - 55 1.6e-15 Ubiquitin-binding WIYLD domain
SET PF00856 688 - 809 8.9e-18 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1659, 1955, 1971
AasI GACNNNNNNGTC 1 cut(s) 2264
Acc36I ACCTGC 3 cut(s) 633, 1017, 2026
AccBSI CCGCTC 1 cut(s) 1212
AccI GTMKAC 2 cut(s) 1354, 2268
AccII CGCG 2 cut(s) 1120, 1643
AciI CCGC 5 cut(s) 500, 1210, 1889, 1977, 2500
AclWI GGATC 1 cut(s) 2320
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 3 cut(s) 50, 967, 1648
AcuI CTGAAG 4 cut(s) 84, 107, 306, 693
AfaI GTAC 5 cut(s) 168, 623, 1007, 2010, 2196
AfiI CCNNNNNNNGG 3 cut(s) 76, 1015, 1216
AgsI TTSAA 6 cut(s) 131, 929, 1385, 1716, 2233, 2336
AhlI ACTAGT 1 cut(s) 2579
AjnI CCWGG 4 cut(s) 320, 707, 772, 1795
Alw21I GWGCWC 1 cut(s) 2412
Alw26I GTCTC 5 cut(s) 1054, 1065, 2336, 2477, 2577
AlwI GGATC 1 cut(s) 2320
AlwNI CAGNNNCTG 4 cut(s) 542, 587, 1544, 1992
AoxI GGCC 3 cut(s) 5, 30, 1665
ApeKI GCWGC 5 cut(s) 80, 202, 442, 826, 1395
ApoI RAATTY 3 cut(s) 50, 967, 1648
AseI ATTAAT 1 cut(s) 1256
Asp700I GAANNNNTTC 1 cut(s) 2462
AspLEI GCGC 3 cut(s) 85, 221, 1645
AspS9I GGNCC 2 cut(s) 515, 935
AsuC2I CCSGG 1 cut(s) 1507
AsuHPI GGTGA 7 cut(s) 617, 1012, 1160, 1231, 1586, 1790, 2560
AvaII GGWCC 2 cut(s) 515, 935
BaeGI GKGCMC 1 cut(s) 1889
BanII GRGCYC 1 cut(s) 2412
Bbv12I GWGCWC 1 cut(s) 2412
BbvI GCAGC 5 cut(s) 67, 214, 454, 838, 1407
BccI CCATC 6 cut(s) 277, 584, 664, 968, 1162, 2144
BceAI ACGGC 1 cut(s) 2555
BciT130I CCWGG 4 cut(s) 322, 709, 774, 1797
BciVI GTATCC 1 cut(s) 1165
BclI TGATCA 1 cut(s) 1327
BcnI CCSGG 1 cut(s) 1507
BcoDI GTCTC 5 cut(s) 1054, 1065, 2336, 2477, 2577
BcuI ACTAGT 1 cut(s) 2579
BfaI CTAG 6 cut(s) 639, 885, 1110, 1892, 2201, 2580
BfmI CTRYAG 1 cut(s) 2262
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 3 cut(s) 633, 1017, 2026
BfuI GTATCC 1 cut(s) 1165
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 6 cut(s) 81, 203, 443, 827, 1210, 1396
BlsI GCNGC 6 cut(s) 82, 204, 444, 828, 1211, 1397
BmcAI AGTACT 1 cut(s) 2196
Bme1390I CCNGG 5 cut(s) 322, 709, 774, 1507, 1797
Bme18I GGWCC 2 cut(s) 515, 935
BmgT120I GGNCC 2 cut(s) 515, 935
BmiI GGNNCC 1 cut(s) 937
BmrFI CCNGG 5 cut(s) 322, 709, 774, 1507, 1797
BmrI ACTGGG 6 cut(s) 127, 933, 1082, 2186, 2221, 2324
BmsI GCATC 4 cut(s) 216, 1085, 2194, 2299
BmuI ACTGGG 6 cut(s) 127, 933, 1082, 2186, 2221, 2324
BoxI GACNNNNGTC 1 cut(s) 1232
BplI GAGNNNNNCTC 8 cut(s) 367, 399, 445, 477, 754, 786, 829, 861
BpmI CTGGAG 2 cut(s) 756, 1221
BpuEI CTTGAG 3 cut(s) 394, 468, 781
BpuMI CCSGG 1 cut(s) 1507
BsaAI YACGTR 2 cut(s) 1352, 2150
BsaBI GATNNNNATC 1 cut(s) 1332
BsaI GGTCTC 2 cut(s) 1065, 2336
BsaJI CCNNGG 3 cut(s) 207, 1215, 1596
BsaWI WCCGGW 1 cut(s) 2001
BsaXI ACNNNNNCTCC 4 cut(s) 1791, 1821, 2115, 2145
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 1015, 1216
Bse1I ACTGG 9 cut(s) 122, 939, 1013, 1088, 1204, 2085, 2192, 2216, 2330
Bse3DI GCAATG 4 cut(s) 48, 57, 2019, 2087
Bse8I GATNNNNATC 1 cut(s) 1332
BseBI CCWGG 4 cut(s) 322, 709, 774, 1797
BseDI CCNNGG 3 cut(s) 207, 1215, 1596
BseGI GGATG 2 cut(s) 2230, 2395
BseJI GATNNNNATC 1 cut(s) 1332
BseLI CCNNNNNNNGG 3 cut(s) 76, 1015, 1216
BseMI GCAATG 4 cut(s) 48, 57, 2019, 2087
BseNI ACTGG 9 cut(s) 122, 939, 1013, 1088, 1204, 2085, 2192, 2216, 2330
BseRI GAGGAG 2 cut(s) 449, 2420
BseSI GKGCMC 1 cut(s) 1889
BseXI GCAGC 5 cut(s) 67, 214, 454, 838, 1407
BsgI GTGCAG 2 cut(s) 221, 1312
Bsh1236I CGCG 2 cut(s) 1120, 1643
BshFI GGCC 3 cut(s) 7, 32, 1667
BsiHKAI GWGCWC 1 cut(s) 2412
BsiSI CCGG 2 cut(s) 1506, 2002
BslFI GGGAC 5 cut(s) 921, 1210, 1742, 1947, 2432
BslI CCNNNNNNNGG 3 cut(s) 76, 1015, 1216
BsmAI GTCTC 5 cut(s) 1054, 1065, 2336, 2477, 2577
BsmFI GGGAC 5 cut(s) 921, 1210, 1742, 1947, 2432
BsmI GAATGC 4 cut(s) 247, 1211, 1912, 1967
BsnI GGCC 3 cut(s) 7, 32, 1667
Bso31I GGTCTC 2 cut(s) 1065, 2336
Bsp1286I GDGCHC 2 cut(s) 1889, 2412
Bsp1407I TGTACA 1 cut(s) 2008
Bsp143I GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
Bsp19I CCATGG 1 cut(s) 1215
Bsp68I TCGCGA 1 cut(s) 1120
BspACI CCGC 5 cut(s) 500, 1210, 1889, 1977, 2500
BspANI GGCC 3 cut(s) 7, 32, 1667
BspFNI CGCG 2 cut(s) 1120, 1643
BspHI TCATGA 1 cut(s) 2437
BspLI GGNNCC 1 cut(s) 937
BspMI ACCTGC 3 cut(s) 633, 1017, 2026
BspPI GGATC 1 cut(s) 2320
BspQI GCTCTTC 1 cut(s) 1120
BspTNI GGTCTC 2 cut(s) 1065, 2336
BsrBI CCGCTC 1 cut(s) 1212
BsrDI GCAATG 4 cut(s) 48, 57, 2019, 2087
BsrGI TGTACA 1 cut(s) 2008
BsrI ACTGG 9 cut(s) 122, 939, 1013, 1088, 1204, 2085, 2192, 2216, 2330
BssECI CCNNGG 3 cut(s) 207, 1215, 1596
BssMI GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
BssNAI GTATAC 1 cut(s) 1355
BssT1I CCWWGG 3 cut(s) 207, 1215, 1596
Bst1107I GTATAC 1 cut(s) 1355
Bst2UI CCWGG 4 cut(s) 322, 709, 774, 1797
Bst4CI ACNGT 6 cut(s) 533, 917, 1148, 1733, 1877, 2266
Bst6I CTCTTC 4 cut(s) 186, 1120, 1167, 1907
BstAPI GCANNNNNTGC 1 cut(s) 1290
BstAUI TGTACA 1 cut(s) 2008
BstBAI YACGTR 2 cut(s) 1352, 2150
BstC8I GCNNGC 2 cut(s) 1889, 1927
BstDSI CCRYGG 1 cut(s) 1215
BstF5I GGATG 2 cut(s) 2230, 2395
BstFNI CGCG 2 cut(s) 1120, 1643
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 3 cut(s) 85, 221, 1645
BstKTI GATC 6 cut(s) 1138, 1279, 1330, 1457, 2328, 2353
BstMAI GTCTC 5 cut(s) 1054, 1065, 2336, 2477, 2577
BstMBI GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
BstMWI GCNNNNNNNGC 4 cut(s) 38, 1290, 1858, 2161
BstNI CCWGG 4 cut(s) 322, 709, 774, 1797
BstNSI RCATGY 2 cut(s) 788, 1929
BstPAI GACNNNNGTC 1 cut(s) 1232
BstSCI CCNGG 5 cut(s) 320, 707, 772, 1505, 1795
BstSFI CTRYAG 1 cut(s) 2262
BstSLI GKGCMC 1 cut(s) 1889
BstSNI TACGTA 1 cut(s) 1352
BstUI CGCG 2 cut(s) 1120, 1643
BstV1I GCAGC 5 cut(s) 67, 214, 454, 838, 1407
BstX2I RGATCY 1 cut(s) 2325
BstYI RGATCY 1 cut(s) 2325
BstZ17I GTATAC 1 cut(s) 1355
BsuI GTATCC 1 cut(s) 1165
BsuRI GGCC 3 cut(s) 7, 32, 1667
BtgI CCRYGG 1 cut(s) 1215
BtgZI GCGATG 1 cut(s) 1624
BtsCI GGATG 2 cut(s) 2230, 2395
BtsI GCAGTG 1 cut(s) 1300
BtsIMutI CAGTG 5 cut(s) 1020, 1095, 1236, 1300, 2078
BtuMI TCGCGA 1 cut(s) 1120
BveI ACCTGC 3 cut(s) 633, 1017, 2026
Cac8I GCNNGC 2 cut(s) 1889, 1927
CaiI CAGNNNCTG 4 cut(s) 542, 587, 1544, 1992
CciI TCATGA 1 cut(s) 2437
CfoI GCGC 3 cut(s) 85, 221, 1645
Cfr13I GGNCC 2 cut(s) 515, 935
CseI GACGC 1 cut(s) 287
Csp6I GTAC 5 cut(s) 167, 622, 1006, 2009, 2195
CviAII CATG 5 cut(s) 785, 1216, 1926, 2366, 2438
CviQI GTAC 5 cut(s) 167, 622, 1006, 2009, 2195
DpnI GATC 6 cut(s) 1137, 1278, 1329, 1456, 2327, 2352
DpnII GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
DrdI GACNNNNNNGTC 1 cut(s) 2264
DseDI GACNNNNNNGTC 1 cut(s) 2264
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 4 cut(s) 186, 1120, 1167, 1907
EarI CTCTTC 4 cut(s) 186, 1120, 1167, 1907
Ecl136II GAGCTC 1 cut(s) 2410
Eco105I TACGTA 1 cut(s) 1352
Eco130I CCWWGG 3 cut(s) 207, 1215, 1596
Eco147I AGGCCT 2 cut(s) 32, 1667
Eco24I GRGCYC 1 cut(s) 2412
Eco31I GGTCTC 2 cut(s) 1065, 2336
Eco47I GGWCC 2 cut(s) 515, 935
Eco53kI GAGCTC 1 cut(s) 2410
Eco57I CTGAAG 4 cut(s) 84, 107, 306, 693
EcoICRI GAGCTC 1 cut(s) 2410
EcoO109I RGGNCCY 1 cut(s) 935
EcoRII CCWGG 4 cut(s) 320, 707, 772, 1795
EcoT14I CCWWGG 3 cut(s) 207, 1215, 1596
EcoT22I ATGCAT 3 cut(s) 402, 786, 1184
EcoT38I GRGCYC 1 cut(s) 2412
ErhI CCWWGG 3 cut(s) 207, 1215, 1596
FaeI CATG 5 cut(s) 788, 1219, 1929, 2369, 2441
FalI AAGNNNNNCTT 4 cut(s) 1580, 1612, 2086, 2118
FaqI GGGAC 5 cut(s) 921, 1210, 1742, 1947, 2432
FatI CATG 5 cut(s) 784, 1215, 1925, 2365, 2437
FauI CCCGC 1 cut(s) 1896
FauNDI CATATG 4 cut(s) 274, 661, 1192, 2527
FbaI TGATCA 1 cut(s) 1327
FblI GTMKAC 2 cut(s) 1354, 2268
Fnu4HI GCNGC 6 cut(s) 81, 203, 443, 827, 1210, 1396
FokI GGATG 2 cut(s) 2237, 2402
FriOI GRGCYC 1 cut(s) 2412
Fsp4HI GCNGC 6 cut(s) 81, 203, 443, 827, 1210, 1396
FspBI CTAG 6 cut(s) 639, 885, 1110, 1892, 2201, 2580
GlaI GCGC 3 cut(s) 84, 220, 1644
GluI GCNGC 6 cut(s) 81, 203, 443, 827, 1210, 1396
GsuI CTGGAG 2 cut(s) 756, 1221
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 3 cut(s) 7, 32, 1667
HapII CCGG 2 cut(s) 1506, 2002
HgaI GACGC 1 cut(s) 287
HhaI GCGC 3 cut(s) 85, 221, 1645
Hin1II CATG 5 cut(s) 788, 1219, 1929, 2369, 2441
Hin6I GCGC 3 cut(s) 83, 219, 1643
HinP1I GCGC 3 cut(s) 83, 219, 1643
HindIII AAGCTT 2 cut(s) 370, 757
HpaII CCGG 2 cut(s) 1506, 2002
HphI GGTGA 7 cut(s) 617, 1012, 1160, 1231, 1586, 1790, 2560
Hpy166II GTNNAC 3 cut(s) 1355, 2219, 2269
Hpy188III TCNNGA 9 cut(s) 98, 485, 536, 920, 1119, 1823, 2323, 2438, 2495
Hpy8I GTNNAC 3 cut(s) 1355, 2219, 2269
Hpy99I CGWCG 3 cut(s) 2144, 2538, 2541
HpyAV CCTTC 5 cut(s) 563, 738, 947, 1379, 2048
HpyCH4III ACNGT 6 cut(s) 533, 917, 1148, 1733, 1877, 2266
HpyCH4IV ACGT 2 cut(s) 1351, 2149
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 1290, 1858, 2161
HpySE526I ACGT 2 cut(s) 1351, 2149
Hsp92II CATG 5 cut(s) 788, 1219, 1929, 2369, 2441
HspAI GCGC 3 cut(s) 83, 219, 1643
Ksp22I TGATCA 1 cut(s) 1327
Kzo9I GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
LguI GCTCTTC 1 cut(s) 1120
LmnI GCTCC 4 cut(s) 271, 1217, 1989, 2407
Lsp1109I GCAGC 5 cut(s) 67, 214, 454, 838, 1407
LweI GCATC 4 cut(s) 216, 1085, 2194, 2299
MaeI CTAG 6 cut(s) 639, 885, 1110, 1892, 2201, 2580
MaeII ACGT 2 cut(s) 1351, 2149
MalI GATC 6 cut(s) 1137, 1278, 1329, 1456, 2327, 2352
MbiI CCGCTC 1 cut(s) 1212
MboI GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
MflI RGATCY 1 cut(s) 2325
MhlI GDGCHC 2 cut(s) 1889, 2412
MlyI GAGTC 2 cut(s) 815, 1550
MmeI TCCRAC 3 cut(s) 326, 2101, 2557
Mph1103I ATGCAT 3 cut(s) 402, 786, 1184
MroXI GAANNNNTTC 1 cut(s) 2462
MslI CAYNNNNRTG 2 cut(s) 1489, 2024
MspI CCGG 2 cut(s) 1506, 2002
MspR9I CCNGG 5 cut(s) 322, 709, 774, 1507, 1797
Mva1269I GAATGC 4 cut(s) 247, 1211, 1912, 1967
MvaI CCWGG 4 cut(s) 322, 709, 774, 1797
MvnI CGCG 2 cut(s) 1120, 1643
MwoI GCNNNNNNNGC 4 cut(s) 38, 1290, 1858, 2161
NciI CCSGG 1 cut(s) 1507
NcoI CCATGG 1 cut(s) 1215
NdeI CATATG 4 cut(s) 274, 661, 1192, 2527
NdeII GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
NlaIII CATG 5 cut(s) 788, 1219, 1929, 2369, 2441
NlaIV GGNNCC 1 cut(s) 937
NmeAIII GCCGAG 1 cut(s) 1642
NmuCI GTSAC 5 cut(s) 880, 1225, 1234, 2354, 2495
NruI TCGCGA 1 cut(s) 1120
NsiI ATGCAT 3 cut(s) 402, 786, 1184
NspI RCATGY 2 cut(s) 788, 1929
PaeI GCATGC 1 cut(s) 1929
PagI TCATGA 1 cut(s) 2437
PceI AGGCCT 2 cut(s) 32, 1667
PciSI GCTCTTC 1 cut(s) 1120
PctI GAATGC 4 cut(s) 247, 1211, 1912, 1967
PdmI GAANNNNTTC 1 cut(s) 2462
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 6 cut(s) 82, 204, 444, 828, 1211, 1397
PleI GAGTC 2 cut(s) 815, 1549
PpsI GAGTC 2 cut(s) 815, 1549
Ppu21I YACGTR 2 cut(s) 1352, 2150
PpuMI RGGWCCY 1 cut(s) 935
PshAI GACNNNNGTC 1 cut(s) 1232
PshBI ATTAAT 1 cut(s) 1256
PsiI TTATAA 3 cut(s) 1659, 1955, 1971
Psp124BI GAGCTC 1 cut(s) 2412
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 4 cut(s) 320, 707, 772, 1795
PspGI CCWGG 4 cut(s) 320, 707, 772, 1795
PspN4I GGNNCC 1 cut(s) 937
PspPI GGNCC 2 cut(s) 515, 935
PspPPI RGGWCCY 1 cut(s) 935
PstNI CAGNNNCTG 4 cut(s) 542, 587, 1544, 1992
PsuI RGATCY 1 cut(s) 2325
RruI TCGCGA 1 cut(s) 1120
RsaI GTAC 5 cut(s) 168, 623, 1007, 2010, 2196
RsaNI GTAC 5 cut(s) 167, 622, 1006, 2009, 2195
RseI CAYNNNNRTG 2 cut(s) 1489, 2024
SacI GAGCTC 1 cut(s) 2412
SapI GCTCTTC 1 cut(s) 1120
SatI GCNGC 6 cut(s) 81, 203, 443, 827, 1210, 1396
Sau3AI GATC 6 cut(s) 1135, 1276, 1327, 1454, 2325, 2350
Sau96I GGNCC 2 cut(s) 515, 935
ScaI AGTACT 1 cut(s) 2196
SchI GAGTC 2 cut(s) 815, 1550
ScrFI CCNGG 5 cut(s) 322, 709, 774, 1507, 1797
SduI GDGCHC 2 cut(s) 1889, 2412
SfaNI GCATC 4 cut(s) 216, 1085, 2194, 2299
SfcI CTRYAG 1 cut(s) 2262
SinI GGWCC 2 cut(s) 515, 935
SmiMI CAYNNNNRTG 2 cut(s) 1489, 2024
SmlI CTYRAG 3 cut(s) 373, 483, 760
SmoI CTYRAG 3 cut(s) 373, 483, 760
SnaBI TACGTA 1 cut(s) 1352
SpeI ACTAGT 1 cut(s) 2579
SphI GCATGC 1 cut(s) 1929
SseBI AGGCCT 2 cut(s) 32, 1667
SsiI CCGC 5 cut(s) 500, 1210, 1889, 1977, 2500
SspMI CTAG 6 cut(s) 639, 885, 1110, 1892, 2201, 2580
SstI GAGCTC 1 cut(s) 2412
StuI AGGCCT 2 cut(s) 32, 1667
StyD4I CCNGG 5 cut(s) 320, 707, 772, 1505, 1795
StyI CCWWGG 3 cut(s) 207, 1215, 1596
TaaI ACNGT 6 cut(s) 533, 917, 1148, 1733, 1877, 2266
TaiI ACGT 2 cut(s) 1354, 2152
TaqI TCGA 4 cut(s) 463, 847, 2139, 2322
TatI WGTACW 2 cut(s) 2008, 2194
TauI GCSGC 1 cut(s) 1212
TscAI CASTG 5 cut(s) 1020, 1095, 1243, 1300, 2085
TseFI GTSAC 5 cut(s) 880, 1225, 1234, 2354, 2495
TseI GCWGC 5 cut(s) 80, 202, 442, 826, 1395
Tsp45I GTSAC 5 cut(s) 880, 1225, 1234, 2354, 2495
TspGWI ACGGA 2 cut(s) 1960, 2286
TspRI CASTG 5 cut(s) 1020, 1095, 1243, 1300, 2085
VpaK11BI GGWCC 2 cut(s) 515, 935
VspI ATTAAT 1 cut(s) 1256
XapI RAATTY 3 cut(s) 50, 967, 1648
XceI RCATGY 2 cut(s) 788, 1929
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmiI GTMKAC 2 cut(s) 1354, 2268
XmnI GAANNNNTTC 1 cut(s) 2462
XspI CTAG 6 cut(s) 639, 885, 1110, 1892, 2201, 2580
ZrmI AGTACT 1 cut(s) 2196
Zsp2I ATGCAT 3 cut(s) 402, 786, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.