FvH4_2g08560

Organ-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001115
Physical Location & Seq
Forward (+)
7490006 .. 7490855
850 bp
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UTR
Exon/CDS
Intron
FvH4_2g08560.t1

Sequence Viewer

Length: 351 bp
ATGCCAGAAGACTTATGGAAGCTCGTGAAAGAGAAGTTTGAGCTTAACAGTGCTGATAATCTATCTGATGATAAGGCTGAGAAAGCCGATTGCCATGAAAATGGGAAACCTAAGATCGAATTTGAGGTTGCTGAGTTTGAACCGAGACCTAATGTCTCAGTTTATCCTGATGACAGTGAAGTAACGGGGTCAAGAACTCTCGAAGACGAGCCAGAATCCAAGGCCATAGGTAACATGGACTCTAAGGATAATGGTACTAAAGATAAGCTGCCATTTGAAGCCAAAGCCAAAAATCACGCATTTGAAGAAGATTTTGAACCAAGGCCAGATGTTACTGTGTACAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

117

Amino Acids

13.19

Weight (kDa)

4.45

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Organ_specific PF10950 1 - 115 3e-08 Organ specific protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 256, 341
AgsI TTSAA 4 cut(s) 140, 278, 305, 317
AhdI GACNNNNNGTC 1 cut(s) 152
AluBI AGCT 3 cut(s) 22, 43, 268
AluI AGCT 3 cut(s) 22, 43, 268
Alw26I GTCTC 2 cut(s) 139, 160
AoxI GGCC 2 cut(s) 222, 323
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 119
BauI CACGAG 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 15, 210
BbvI GCAGC 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 139, 160
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
BmeRI GACNNNNNGTC 1 cut(s) 152
BpiI GAAGAC 2 cut(s) 15, 210
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 219, 320
BseDI CCNNGG 2 cut(s) 219, 320
BseMII CTCAG 3 cut(s) 69, 123, 171
BseXI GCAGC 1 cut(s) 255
BshFI GGCC 2 cut(s) 224, 325
BsmAI GTCTC 2 cut(s) 139, 160
BsnI GGCC 2 cut(s) 224, 325
Bso31I GGTCTC 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 1 cut(s) 114
BspANI GGCC 2 cut(s) 224, 325
BspCNI CTCAG 3 cut(s) 70, 124, 170
BspTNI GGTCTC 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 219, 320
BssMI GATC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 219, 320
Bst2BI CACGAG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 50, 176, 337
BstAUI TGTACA 1 cut(s) 339
BstDEI CTNAG 5 cut(s) 78, 111, 132, 157, 243
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 2 cut(s) 139, 160
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 2 cut(s) 15, 210
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuRI GGCC 2 cut(s) 224, 325
BtsIMutI CAGTG 2 cut(s) 55, 181
Csp6I GTAC 2 cut(s) 255, 340
CviAII CATG 2 cut(s) 95, 235
CviQI GTAC 2 cut(s) 255, 340
DdeI CTNAG 5 cut(s) 78, 111, 132, 157, 243
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
DriI GACNNNNNGTC 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 219, 320
Eco31I GGTCTC 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 219, 320
ErhI CCWWGG 2 cut(s) 219, 320
FaeI CATG 2 cut(s) 98, 238
FaiI YATR 4 cut(s) 16, 96, 227, 236
FatI CATG 2 cut(s) 94, 234
Fnu4HI GCNGC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 269
HaeIII GGCC 2 cut(s) 224, 325
Hin1II CATG 2 cut(s) 98, 238
HinfI GANTC 2 cut(s) 215, 239
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 4 cut(s) 25, 167, 192, 200
Hpy8I GTNNAC 1 cut(s) 340
HpyCH4III ACNGT 3 cut(s) 50, 176, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 5 cut(s) 78, 111, 132, 157, 243
Hsp92II CATG 2 cut(s) 98, 238
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 4 cut(s) 18, 180, 225, 339
Lsp1109I GCAGC 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 181, 230, 331
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 4 cut(s) 20, 215, 317, 320
MluCI AATT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 98, 238
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
RsaI GTAC 2 cut(s) 256, 341
RsaNI GTAC 2 cut(s) 255, 340
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 114
SchI GAGTC 1 cut(s) 233
SetI ASST 7 cut(s) 24, 45, 112, 129, 151, 232, 270
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 1 cut(s) 119
StyI CCWWGG 2 cut(s) 219, 320
TaaI ACNGT 3 cut(s) 50, 176, 337
TaqI TCGA 2 cut(s) 117, 201
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 55, 181
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 2 cut(s) 55, 181
XapI RAATTY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 2 cut(s) 12, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.