Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Forward (+)

14329562 .. 14331118

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATTCTCGTGGCTAGCTTAACTTTATTATATGAAGGCTTTTATTCTCCTACTAGTTTATCTATAAATATTCTGAATTTACGTATCATTGCAACATCGAAAAAAGGCTTCTTTCATAGCATTGCCATCATGAACTCCCTTTGTGCCATCTTAGCTCTGCTCTCACTTCTTTTGTTCACTACAACTGTAGAATCAAGAATAGGTGCAGGAGGCTACATGAAAAATTCCATTAAAAAGCAACCCACGCCAGGAGACTTACGGAAGCTCGTAAAAGAACAGTTTGAGCTTCACAATGCTGATCTATCTGATGATAAGACTGAGAAAGCCAACTGCAATGAAAATGGGAAACCTAACACTGAATTTGAGATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACTTTGAACCGAGGCCTGATGTCACAATTTACCATGGTGACTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACAGTGAAGTAACAGAGTCCAGAACTCTTAAAGACGAGCTAGAGTCTAAGGCCATAGGTAACATGCACCCTAAGGATAAAGGTCCTAAAGATAAGCTGCCATTTGAAGTCAAAGCCAAAAGGCATGCATTTGAAGAAGATTTTGAGCCAAGGCCAAATATTTCTGTGTACAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Organ_specific

Protein Analysis

238

Amino Acids

26.96

Weight (kDa)

5.24

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Organ_specific	PF10950	69 - 165	1.4e-07	Organ specific protein
Organ_specific	PF10950	166 - 237	1.5e-07	Organ specific protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	76, 223, 359
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	6 cut(s)	380, 428, 467, 506, 644, 671
AhdI	GACNNNNNGTC	3 cut(s)	392, 440, 518
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	6 cut(s)	18, 155, 265, 286, 577, 634
AluI	AGCT	6 cut(s)	18, 155, 265, 286, 577, 634
Alw26I	GTCTC	4 cut(s)	246, 379, 427, 505
AoxI	GGCC	3 cut(s)	473, 588, 689
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	3 cut(s)	76, 223, 359
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	4 cut(s)	422, 470, 509, 548
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	609
BauI	CACGAG	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	621
BccI	CCATC	2 cut(s)	134, 155
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	4 cut(s)	246, 379, 427, 505
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	15, 54, 578
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	635
BlsI	GCNGC	1 cut(s)	636
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	620
BmeRI	GACNNNNNGTC	3 cut(s)	392, 440, 518
BmgT120I	GGNCC	1 cut(s)	620
BmrFI	CCNGG	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	3 cut(s)	379, 427, 505
BsaJI	CCNNGG	6 cut(s)	406, 454, 470, 493, 532, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	3 cut(s)	87, 120, 340
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	6 cut(s)	406, 454, 470, 493, 532, 686
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	3 cut(s)	87, 120, 340
BseMII	CTCAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	475, 590, 691
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	4 cut(s)	246, 379, 427, 505
BsnI	GGCC	3 cut(s)	475, 590, 691
Bso31I	GGTCTC	3 cut(s)	379, 427, 505
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	4 cut(s)	406, 454, 493, 532
BspANI	GGCC	3 cut(s)	475, 590, 691
BspCNI	CTCAG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	18
BspTNI	GGTCTC	3 cut(s)	379, 427, 505
BsrDI	GCAATG	3 cut(s)	87, 120, 340
BsrGI	TGTACA	1 cut(s)	705
BssECI	CCNNGG	6 cut(s)	406, 454, 470, 493, 532, 686
BssMI	GATC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	5 cut(s)	406, 454, 493, 532, 686
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	187, 279, 542
BstAUI	TGTACA	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	16, 663
BstDEI	CTNAG	4 cut(s)	151, 318, 585, 609
BstDSI	CCRYGG	4 cut(s)	406, 454, 493, 532
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	4 cut(s)	246, 379, 427, 505
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 244
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	2 cut(s)	604, 665
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	3 cut(s)	475, 590, 691
BtgI	CCRYGG	4 cut(s)	406, 454, 493, 532
BtsIMutI	CAGTG	2 cut(s)	354, 547
Cac8I	GCNNGC	2 cut(s)	16, 663
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	620
Csp6I	GTAC	1 cut(s)	706
CviAII	CATG	8 cut(s)	130, 217, 407, 455, 494, 533, 601, 662
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	4 cut(s)	151, 318, 585, 609
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DriI	GACNNNNNGTC	3 cut(s)	392, 440, 518
Eam1105I	GACNNNNNGTC	3 cut(s)	392, 440, 518
Eco105I	TACGTA	1 cut(s)	83
Eco130I	CCWWGG	5 cut(s)	406, 454, 493, 532, 686
Eco147I	AGGCCT	1 cut(s)	475
Eco31I	GGTCTC	3 cut(s)	379, 427, 505
Eco47I	GGWCC	1 cut(s)	620
Eco81I	CCTNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	5 cut(s)	406, 454, 493, 532, 686
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	5 cut(s)	406, 454, 493, 532, 686
FaeI	CATG	8 cut(s)	133, 220, 410, 458, 497, 536, 604, 665
FatI	CATG	8 cut(s)	129, 216, 406, 454, 493, 532, 600, 661
Fnu4HI	GCNGC	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	635
FspBI	CTAG	3 cut(s)	15, 54, 578
GluI	GCNGC	1 cut(s)	635
HaeIII	GGCC	3 cut(s)	475, 590, 691
Hin1II	CATG	8 cut(s)	133, 220, 410, 458, 497, 536, 604, 665
HinfI	GANTC	4 cut(s)	4, 191, 554, 581
HphI	GGTGA	4 cut(s)	422, 470, 509, 548
Hpy166II	GTNNAC	2 cut(s)	177, 706
Hpy188I	TCNGA	2 cut(s)	75, 307
Hpy188III	TCNNGA	3 cut(s)	130, 195, 558
Hpy8I	GTNNAC	2 cut(s)	177, 706
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	3 cut(s)	187, 279, 542
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	5 cut(s)	92, 206, 333, 604, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 244
HpyF3I	CTNAG	4 cut(s)	151, 318, 585, 609
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	8 cut(s)	133, 220, 410, 458, 497, 536, 604, 665
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	8 cut(s)	192, 234, 261, 402, 450, 489, 528, 571
Lsp1109I	GCAGC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	15, 54, 578
MaeII	ACGT	1 cut(s)	82
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	683, 686
MluCI	AATT	7 cut(s)	76, 223, 359, 399, 447, 486, 525
MlyI	GAGTC	2 cut(s)	563, 590
MnlI	CCTC	2 cut(s)	203, 465
Mph1103I	ATGCAT	1 cut(s)	667
MseI	TTAA	3 cut(s)	20, 231, 567
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	152, 244
NcoI	CCATGG	4 cut(s)	406, 454, 493, 532
NdeII	GATC	1 cut(s)	298
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	8 cut(s)	133, 220, 410, 458, 497, 536, 604, 665
NmuCI	GTSAC	8 cut(s)	394, 410, 442, 458, 481, 497, 520, 536
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	2 cut(s)	604, 665
PaeI	GCATGC	1 cut(s)	665
PagI	TCATGA	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	4, 191
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	636
PleI	GAGTC	2 cut(s)	562, 589
PpsI	GAGTC	2 cut(s)	562, 589
Ppu21I	YACGTR	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	620
PspPPI	RGGWCCY	1 cut(s)	620
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SaqAI	TTAA	3 cut(s)	20, 231, 567
SatI	GCNGC	1 cut(s)	635
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	2 cut(s)	563, 590
ScrFI	CCNGG	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	620
SnaBI	TACGTA	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	53
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	7 cut(s)	76, 223, 359, 399, 447, 486, 525
SseBI	AGGCCT	1 cut(s)	475
SspI	AATATT	2 cut(s)	70, 697
SspMI	CTAG	3 cut(s)	15, 54, 578
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	5 cut(s)	406, 454, 493, 532, 686
TaaI	ACNGT	3 cut(s)	187, 279, 542
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	98, 372, 420
TasI	AATT	7 cut(s)	76, 223, 359, 399, 447, 486, 525
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	2 cut(s)	4, 191
Tru1I	TTAA	3 cut(s)	20, 231, 567
Tru9I	TTAA	3 cut(s)	20, 231, 567
TscAI	CASTG	2 cut(s)	361, 547
TseFI	GTSAC	8 cut(s)	394, 410, 442, 458, 481, 497, 520, 536
TseI	GCWGC	1 cut(s)	634
Tsp45I	GTSAC	8 cut(s)	394, 410, 442, 458, 481, 497, 520, 536
TspDTI	ATGAA	5 cut(s)	48, 104, 146, 233, 351
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	361, 547
Tth111I	GACNNNGTC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	3 cut(s)	76, 223, 359
XceI	RCATGY	2 cut(s)	604, 665
XspI	CTAG	3 cut(s)	15, 54, 578
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.