Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Reverse (-)

59538793 .. 59540485

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG357800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTTCAATGTTTGCAGGGAGATCGTTGTGGTATATATGGATCAAATTGCCCCCAATGGATTATTGCAATGGAGGTAAAGTTGCTAAGTCGGTTGCGTTCTCCATATTTTCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.45

Weight (kDa)

6.08

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 101	6.6e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 101	1.5e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	8, 272
AluBI	AGCT	3 cut(s)	151, 266, 275
AluI	AGCT	3 cut(s)	151, 266, 275
AlwI	GGATC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BbvI	GCAGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciVI	GTATCC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
BpuMI	CCSGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	22, 41
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	22, 41
Bst4CI	ACNGT	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	86, 238
BstKTI	GATC	2 cut(s)	25, 44
BstMBI	GATC	2 cut(s)	22, 41
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	3 cut(s)	151, 266, 275
CviKI_1	RGCY	3 cut(s)	151, 266, 275
DdeI	CTNAG	2 cut(s)	86, 238
DpnI	GATC	2 cut(s)	24, 43
DpnII	GATC	2 cut(s)	22, 41
Eco47I	GGWCC	1 cut(s)	215
FaeI	CATG	1 cut(s)	302
FaiI	YATR	7 cut(s)	35, 37, 39, 106, 162, 170, 300
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	1 cut(s)	302
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	16, 68, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	86, 238
Hsp92II	CATG	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	22, 41
LpnPI	CCDG	5 cut(s)	2, 173, 216, 229, 266
Lsp1109I	GCAGC	1 cut(s)	262
MalI	GATC	2 cut(s)	24, 43
MboI	GATC	2 cut(s)	22, 41
MluCI	AATT	1 cut(s)	46
MnlI	CCTC	2 cut(s)	67, 236
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	22, 41
NlaIII	CATG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	22, 41
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	253
SetI	ASST	5 cut(s)	78, 153, 268, 277, 286
SgeI	CNNG	8 cut(s)	29, 134, 200, 215, 256, 264, 265, 281
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	1 cut(s)	46
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	275
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.