Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Forward (+)

18897616 .. 18898631

Gene Structure 1016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23670

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATTCTCGTGGCTAGCTTAACTTTATTATATGAAGGCTTTTATTCTCCTACTAGTTTATCTATAAATATTCTGAATTTACGTATCATTGCAACATCGAAGGAAGGCTTCTTTCATAGCATTGCCATTATGAACTCCCTTTGTGCCATCTTAGCTCTGCTCTCACTTCTTTTGTTCACTACAACTGTAGAATCGAGAATAGGTGCAGGAGGCTACATGAAAAATTCCATTAAAAAGCAACCCACGCCAGGAGACTTACGGAAGCTCGTAAAAGAACAGTTTGAGCTTCACAATGCTGATCTATCTGAAGATAAGACTGAGAAAGCCAACTGCAATGAAAATGGGAAACCTAACACTGAATTTGAGATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACAGTGAAGTAACAGAGTCCAGAACTCTTAAAGACGAGCTAGAGTCTAAGGCCATAGGTAACATGCACCCTAAGGATAATGGTCCTAAAGATAAGCTGCCATTTGAAGTCAAAGCCAAAAGGCATGCATTTGAAGTAGGTCGGCCAAATGTTTCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Organ_specific

Protein Analysis

235

Amino Acids

26.43

Weight (kDa)

5.22

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Organ_specific	PF10950	69 - 165	5.7e-08	Organ specific protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	3 cut(s)	76, 223, 359
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	6 cut(s)	380, 428, 467, 515, 653, 680
AhdI	GACNNNNNGTC	4 cut(s)	392, 440, 479, 527
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	6 cut(s)	18, 155, 265, 286, 586, 643
AluI	AGCT	6 cut(s)	18, 155, 265, 286, 586, 643
Alw26I	GTCTC	5 cut(s)	246, 379, 427, 466, 514
AoxI	GGCC	2 cut(s)	597, 689
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	3 cut(s)	76, 223, 359
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	4 cut(s)	422, 470, 509, 557
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	629
AxyI	CCTNAGG	1 cut(s)	618
BauI	CACGAG	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	5 cut(s)	246, 379, 427, 466, 514
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	15, 54, 587
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	629
BmeRI	GACNNNNNGTC	4 cut(s)	392, 440, 479, 527
BmgT120I	GGNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	4 cut(s)	379, 427, 466, 514
BsaJI	CCNNGG	4 cut(s)	406, 454, 493, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse21I	CCTNAGG	1 cut(s)	618
Bse3DI	GCAATG	3 cut(s)	87, 120, 340
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	4 cut(s)	406, 454, 493, 541
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	3 cut(s)	87, 120, 340
BseMII	CTCAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	630
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	599, 691
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	5 cut(s)	246, 379, 427, 466, 514
BsnI	GGCC	2 cut(s)	599, 691
Bso31I	GGTCTC	4 cut(s)	379, 427, 466, 514
Bsp143I	GATC	1 cut(s)	298
Bsp19I	CCATGG	4 cut(s)	406, 454, 493, 541
BspANI	GGCC	2 cut(s)	599, 691
BspCNI	CTCAG	1 cut(s)	310
BspOI	GCTAGC	1 cut(s)	18
BspTNI	GGTCTC	4 cut(s)	379, 427, 466, 514
BsrDI	GCAATG	3 cut(s)	87, 120, 340
BssECI	CCNNGG	4 cut(s)	406, 454, 493, 541
BssMI	GATC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	4 cut(s)	406, 454, 493, 541
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	187, 279, 551
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	16, 672
BstDEI	CTNAG	4 cut(s)	151, 318, 594, 618
BstDSI	CCRYGG	4 cut(s)	406, 454, 493, 541
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	5 cut(s)	246, 379, 427, 466, 514
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 244
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	2 cut(s)	613, 674
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	186
BstSNI	TACGTA	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	630
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	599, 691
BtgI	CCRYGG	4 cut(s)	406, 454, 493, 541
BtsIMutI	CAGTG	2 cut(s)	354, 556
Cac8I	GCNNGC	2 cut(s)	16, 672
Cfr13I	GGNCC	1 cut(s)	629
CviAII	CATG	7 cut(s)	217, 407, 455, 494, 542, 610, 671
DdeI	CTNAG	4 cut(s)	151, 318, 594, 618
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DriI	GACNNNNNGTC	4 cut(s)	392, 440, 479, 527
EaeI	YGGCCR	1 cut(s)	689
Eam1105I	GACNNNNNGTC	4 cut(s)	392, 440, 479, 527
Eco105I	TACGTA	1 cut(s)	83
Eco130I	CCWWGG	4 cut(s)	406, 454, 493, 541
Eco31I	GGTCTC	4 cut(s)	379, 427, 466, 514
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	4 cut(s)	406, 454, 493, 541
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	4 cut(s)	406, 454, 493, 541
FaeI	CATG	7 cut(s)	220, 410, 458, 497, 545, 613, 674
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	7 cut(s)	216, 406, 454, 493, 541, 609, 670
Fnu4HI	GCNGC	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	644
FspBI	CTAG	3 cut(s)	15, 54, 587
GluI	GCNGC	1 cut(s)	644
HaeIII	GGCC	2 cut(s)	599, 691
Hin1II	CATG	7 cut(s)	220, 410, 458, 497, 545, 613, 674
HinfI	GANTC	4 cut(s)	4, 191, 563, 590
HphI	GGTGA	4 cut(s)	422, 470, 509, 557
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	75, 307
Hpy188III	TCNNGA	2 cut(s)	195, 567
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	3 cut(s)	29, 94, 98
HpyCH4III	ACNGT	3 cut(s)	187, 279, 551
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	5 cut(s)	92, 206, 333, 613, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 244
HpyF3I	CTNAG	4 cut(s)	151, 318, 594, 618
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	7 cut(s)	220, 410, 458, 497, 545, 613, 674
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	8 cut(s)	192, 234, 261, 402, 450, 489, 537, 580
Lsp1109I	GCAGC	1 cut(s)	630
MaeI	CTAG	3 cut(s)	15, 54, 587
MaeII	ACGT	1 cut(s)	82
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	320
MluCI	AATT	7 cut(s)	76, 223, 359, 399, 447, 486, 534
MlyI	GAGTC	2 cut(s)	572, 599
MnlI	CCTC	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	3 cut(s)	20, 231, 576
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	152, 244
NcoI	CCATGG	4 cut(s)	406, 454, 493, 541
NdeII	GATC	1 cut(s)	298
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	7 cut(s)	220, 410, 458, 497, 545, 613, 674
NmuCI	GTSAC	8 cut(s)	394, 410, 442, 458, 481, 497, 529, 545
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	2 cut(s)	613, 674
PaeI	GCATGC	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	4, 191
PflFI	GACNNNGTC	2 cut(s)	416, 503
PkrI	GCNGC	1 cut(s)	645
PleI	GAGTC	2 cut(s)	571, 598
PpsI	GAGTC	2 cut(s)	571, 598
Ppu21I	YACGTR	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	629
PsyI	GACNNNGTC	2 cut(s)	416, 503
SaqAI	TTAA	3 cut(s)	20, 231, 576
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	2 cut(s)	572, 599
ScrFI	CCNGG	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	629
SnaBI	TACGTA	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	53
SphI	GCATGC	1 cut(s)	674
Sse9I	AATT	7 cut(s)	76, 223, 359, 399, 447, 486, 534
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	3 cut(s)	15, 54, 587
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	4 cut(s)	406, 454, 493, 541
TaaI	ACNGT	3 cut(s)	187, 279, 551
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	98, 194, 372, 420, 507
TasI	AATT	7 cut(s)	76, 223, 359, 399, 447, 486, 534
TfiI	GAWTC	2 cut(s)	4, 191
Tru1I	TTAA	3 cut(s)	20, 231, 576
Tru9I	TTAA	3 cut(s)	20, 231, 576
TscAI	CASTG	2 cut(s)	361, 556
TseFI	GTSAC	8 cut(s)	394, 410, 442, 458, 481, 497, 529, 545
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	8 cut(s)	394, 410, 442, 458, 481, 497, 529, 545
TspDTI	ATGAA	5 cut(s)	48, 104, 146, 233, 351
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	361, 556
Tth111I	GACNNNGTC	2 cut(s)	416, 503
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	3 cut(s)	76, 223, 359
XceI	RCATGY	2 cut(s)	613, 674
XspI	CTAG	3 cut(s)	15, 54, 587
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.