Rh6DG147300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001115
Physical Location & Seq
Forward (+)
21328339 .. 21334015
5677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG147300.1

Sequence Viewer

Length: 249 bp
ATGGATAGAAAAATTGAATGTCAACAAAGCATCCAACCCCAAAAGCCTACTTTCAATGCGAGCTTGAAAGGACTGTCCGAAGCAGCTTCTTATATTGATAGTGCTGTTCATCTCAAAACTGGAAGGAATGCCACCAAGTTGCAGGCTCCCACAGAAAGTATGTTGTTCACAGTGACTGATGACATTCCACATAAGAGCAGTCAGAGGAAGCTTCCTAGCCAGTTCATTCAGGTTGAGGCTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.12

Weight (kDa)

7.9

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 17, 55, 67
AluBI AGCT 3 cut(s) 63, 86, 211
AluI AGCT 3 cut(s) 63, 86, 211
AlwNI CAGNNNCTG 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 95
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 124, 220
BseGI GGATG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 124, 220
BseXI GCAGC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 147
BsrI ACTGG 2 cut(s) 124, 220
Bst4CI ACNGT 2 cut(s) 75, 172
BstC8I GCNNGC 2 cut(s) 61, 144
BstF5I GGATG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 2 cut(s) 61, 144
CaiI CAGNNNCTG 1 cut(s) 176
CviJI RGCY 7 cut(s) 46, 63, 86, 146, 211, 219, 239
CviKI_1 RGCY 7 cut(s) 46, 63, 86, 146, 211, 219, 239
FaiI YATR 3 cut(s) 93, 161, 192
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 23, 168
Hpy188I TCNGA 2 cut(s) 79, 204
Hpy8I GTNNAC 2 cut(s) 23, 168
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 2 cut(s) 75, 172
HpyCH4V TGCA 1 cut(s) 142
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 105, 128, 215, 233
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 172
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 2 cut(s) 198, 229
Mva1269I GAATGC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 172
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 176
SatI GCNGC 1 cut(s) 84
SetI ASST 4 cut(s) 65, 88, 213, 234
SfaNI GCATC 1 cut(s) 39
SgeI CNNG 8 cut(s) 72, 76, 132, 148, 155, 228, 232, 242
Sse9I AATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 75, 172
TasI AATT 1 cut(s) 12
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 98, 214
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.