Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Forward (+)

19215101 .. 19233051

Gene Structure 17951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGACCCTACTCTGGATTTCGAGCTCAAAACTGGAAGGAATGCCACCAAGTTGCAGGCTCCCACAGAAAGTATGTTGTTCACAGTGACTGATGACATTCCACATAAGAGCAGTCAGAGGAAGCTTCCTAGCCAGTTCATTCAGGTGTTGAAACACGGGAATAATATACAATGCTCAGCTTTGGAGCTTGCTTCTAGCAAACACGCAGAGAAACTCATTCCATTGTCATTCCGTCTTCCTCTCAGGTGCGTGATTCCGGGGTGGGCTAAGAACACCAAATTGTCTGGCAATGGTAAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTTCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGGAAAAGATATCCTGGAAATCAACCATCCCGAAAGTTCTTTCGGCATAAAGACCCGAACATGCTCATTGAATGTCATTCCACTAAGTCATGGTTCTTTGAGGGAAAATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

23.07

Weight (kDa)

8.65

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	2 cut(s)	467, 480
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	151, 577
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	5 cut(s)	25, 124, 179, 187, 373
AluI	AGCT	5 cut(s)	25, 124, 179, 187, 373
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	467, 480
AlwNI	CAGNNNCTG	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	404, 437
BamHI	GGATCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	1 cut(s)	540
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	2 cut(s)	129, 195
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	434
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	2 cut(s)	258, 521
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 60, 474
BmrFI	CCNGG	2 cut(s)	258, 521
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	37, 133
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	189, 256
BseNI	ACTGG	2 cut(s)	37, 133
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	465, 472
Bsp1720I	GCTNAGC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	188, 255
BspLI	GGNNCC	3 cut(s)	6, 60, 474
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	2 cut(s)	467, 480
BsrDI	GCAATG	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	37, 133
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	465, 472
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	85, 365
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	57, 189
BstDEI	CTNAG	5 cut(s)	175, 242, 267, 308, 590
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	2 cut(s)	468, 475
BstMBI	GATC	2 cut(s)	465, 472
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	2 cut(s)	256, 519
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	57, 189
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	3 cut(s)	469, 567, 596
CviJI	RGCY	8 cut(s)	25, 59, 124, 132, 179, 187, 266, 373
CviKI_1	RGCY	8 cut(s)	25, 59, 124, 132, 179, 187, 266, 373
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	5 cut(s)	175, 242, 267, 308, 590
DpnI	GATC	2 cut(s)	467, 474
DpnII	GATC	2 cut(s)	465, 472
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	519
EcoRV	GATATC	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	3 cut(s)	472, 570, 599
FatI	CATG	3 cut(s)	468, 566, 595
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	1 cut(s)	519
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	2 cut(s)	129, 195
GluI	GCNGC	1 cut(s)	434
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	3 cut(s)	472, 570, 599
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	117, 358, 441
Hpy188III	TCNNGA	2 cut(s)	14, 536
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	30, 496
HpyCH4III	ACNGT	2 cut(s)	85, 365
HpyCH4V	TGCA	3 cut(s)	55, 409, 479
HpyF3I	CTNAG	5 cut(s)	175, 242, 267, 308, 590
Hsp92II	CATG	3 cut(s)	472, 570, 599
Kzo9I	GATC	2 cut(s)	465, 472
LmnI	GCTCC	3 cut(s)	64, 184, 451
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	129, 195
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	467, 474
MboI	GATC	2 cut(s)	465, 472
MboII	GAAGA	1 cut(s)	227
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	1 cut(s)	278
MnlI	CCTC	5 cut(s)	111, 249, 478, 499, 600
MseI	TTAA	1 cut(s)	619
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	258, 521
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	521
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	465, 472
NlaIII	CATG	3 cut(s)	472, 570, 599
NlaIV	GGNNCC	3 cut(s)	6, 60, 474
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	570
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	6, 60, 474
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	619
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	2 cut(s)	465, 472
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	258, 521
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	27, 126, 147, 181, 189, 248, 300, 375, 459
SfaNI	GCATC	1 cut(s)	445
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	2 cut(s)	129, 195
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	256, 519
TaaI	ACNGT	2 cut(s)	85, 365
TaqI	TCGA	2 cut(s)	21, 497
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	127, 515
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	570
XspI	CTAG	2 cut(s)	129, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.