Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Reverse (-)

964575 .. 976726

Gene Structure 12152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAGCGCGATTTCCAGTTCTTGTGGTCGCTGACGATTTCGATGCCAAAGATCGAATCCCATCAATTCACGATTCAGAAATCGAATCAAATTCCATCTCACATAGTAGTTCACTTGAACCACTAAAGAACAGGTTGAGCTTTAACAATGCTGATCTATCTGATGATAAGGCTGAGAAAGCCAACTGCAATGAAAATGGGAAACCTAACAGTGAATTTGGGATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACATTGTCGAGTTTGAACCGAGACCTGATATCACAATTTATCATGGTGACAGTGAAGTAACAGAGTCCAGAACTCTTAAAGACGAGCTAGAGTCGAAGGCCAAAGGTAACATGCACCCTAAGGATAAAGGTCCTAAAGATAAGCTGCCATTTGAAGTCAAAGCCAAAAGGTATGCATTTGAAGAAGATTTTGAGCCAAGGCCAAATATTTCTGTGTACAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Organ_specific

Protein Analysis

164

Amino Acids

18.57

Weight (kDa)

4.81

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Organ_specific	PF10950	93 - 163	4.1e-07	Organ specific protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	91, 215
AfaI	GTAC	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	119, 236, 284, 422, 449
AhdI	GACNNNNNGTC	1 cut(s)	248
AluBI	AGCT	3 cut(s)	141, 355, 412
AluI	AGCT	3 cut(s)	141, 355, 412
Alw26I	GTCTC	2 cut(s)	235, 283
AoxI	GGCC	2 cut(s)	366, 467
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	2 cut(s)	91, 215
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	278, 326
AvaII	GGWCC	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	2 cut(s)	70, 104
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BcoDI	GTCTC	2 cut(s)	235, 283
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	398
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	398
BmsI	GCATC	1 cut(s)	34
BsaI	GGTCTC	2 cut(s)	235, 283
BsaJI	CCNNGG	2 cut(s)	262, 464
Bse1I	ACTGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	262, 464
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	368, 469
BsmAI	GTCTC	2 cut(s)	235, 283
BsnI	GGCC	2 cut(s)	368, 469
Bso31I	GGTCTC	2 cut(s)	235, 283
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	52, 154
Bsp19I	CCATGG	1 cut(s)	262
BspANI	GGCC	2 cut(s)	368, 469
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	10
BspTNI	GGTCTC	2 cut(s)	235, 283
BsrDI	GCAATG	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	262, 464
BssMI	GATC	2 cut(s)	52, 154
BssT1I	CCWWGG	2 cut(s)	262, 464
Bst4CI	ACNGT	2 cut(s)	212, 320
BstAUI	TGTACA	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	174, 387
BstDSI	CCRYGG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	55, 157
BstMAI	GTCTC	2 cut(s)	235, 283
BstMBI	GATC	2 cut(s)	52, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	382
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	368, 469
BtgI	CCRYGG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	217, 325
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	263, 311, 379
CviJI	RGCY	9 cut(s)	141, 173, 182, 355, 368, 412, 431, 463, 469
CviKI_1	RGCY	9 cut(s)	141, 173, 182, 355, 368, 412, 431, 463, 469
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	174, 387
DpnI	GATC	2 cut(s)	54, 156
DpnII	GATC	2 cut(s)	52, 154
DriI	GACNNNNNGTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	262, 464
Eco31I	GGTCTC	2 cut(s)	235, 283
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	262, 464
EcoT22I	ATGCAT	1 cut(s)	445
ErhI	CCWWGG	2 cut(s)	262, 464
FaeI	CATG	3 cut(s)	266, 314, 382
FaiI	YATR	5 cut(s)	105, 264, 312, 380, 441
FatI	CATG	3 cut(s)	262, 310, 378
Fnu4HI	GCNGC	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	368, 469
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	266, 314, 382
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	5 cut(s)	57, 74, 86, 332, 359
HphI	GGTGA	2 cut(s)	278, 326
Hpy166II	GTNNAC	2 cut(s)	113, 484
Hpy188I	TCNGA	2 cut(s)	79, 163
Hpy188III	TCNNGA	2 cut(s)	71, 336
Hpy8I	GTNNAC	2 cut(s)	113, 484
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	212, 320
HpyCH4V	TGCA	3 cut(s)	189, 382, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	174, 387
Hsp92II	CATG	3 cut(s)	266, 314, 382
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	52, 154
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	5 cut(s)	30, 118, 258, 306, 349
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	5 cut(s)	250, 266, 314, 325, 374
MalI	GATC	2 cut(s)	54, 156
MboI	GATC	2 cut(s)	52, 154
MboII	GAAGA	2 cut(s)	461, 464
MluCI	AATT	5 cut(s)	66, 91, 215, 255, 303
MlyI	GAGTC	2 cut(s)	341, 368
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	2 cut(s)	144, 345
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	2 cut(s)	52, 154
NlaIII	CATG	3 cut(s)	266, 314, 382
NmuCI	GTSAC	3 cut(s)	250, 266, 314
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	57, 74, 86
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	414
PleI	GAGTC	2 cut(s)	340, 367
PpsI	GAGTC	2 cut(s)	340, 367
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	398
PspPPI	RGGWCCY	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	144, 345
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	2 cut(s)	52, 154
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	341, 368
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	398
Sse9I	AATT	5 cut(s)	66, 91, 215, 255, 303
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	262, 464
TaaI	ACNGT	2 cut(s)	212, 320
TaqI	TCGA	6 cut(s)	42, 55, 84, 228, 276, 362
TasI	AATT	5 cut(s)	66, 91, 215, 255, 303
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	3 cut(s)	57, 74, 86
Tru1I	TTAA	2 cut(s)	144, 345
Tru9I	TTAA	2 cut(s)	144, 345
TscAI	CASTG	2 cut(s)	217, 325
TseFI	GTSAC	3 cut(s)	250, 266, 314
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	3 cut(s)	250, 266, 314
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	2 cut(s)	217, 325
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	2 cut(s)	91, 215
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.