Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Forward (+)

14270085 .. 14309780

Gene Structure 39696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAGAGTGGGTCACTGAAATTTACTTACCTTCTGCTCAAAACTGGAAGGAATGCCACCAAGTTGCAGGCTCCCACAGAAAGTATGTTGTTCACAGTGACTGATGACATTCCACATAAGAGCAGTCAGAGGAAGCTTCCTAGCCAGTTCATTCAGGTGTTGAAACACGGGAATAATATACAATGCTCAGCTTTGGAGCTTGCTTCTAGCAAACACGCAGAGAAACTCATTCCATTGTCATTCCGTCTTCCTCTCAGGTGCGTGATTCCGGGGTGGGCTAAGAACACCAAATTGTCTGGCAATGGTAAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTTCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTCCTAATTCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACACAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCACACTTGGATCTGACAAAGCTGGAGGTTATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGACCCCTTGGAGAAGGTGTTCTCGTTTCTTGGGTTTCATATTGTTCAAACATCGAAGGAAGCCTTCTTGCATAGCATTGTAGACATGAACTCCCTTTGTGCCATCTTAGCTGTTCTCTCATTTCTTTTGTTCACTACAACTATAGAATCATCAAGAATAGTTGCAGGAGGCTACAAGGAAAATGCTATTGAAAGGCAGCCCATGCCACAAAACTTATGGCAACTAATGAAAAAACAACTTGACATTGATAATGTTGATCTTTCTGATGATAAAGATGAGAAACCCGACTGCCATGATCTGAAACCTAGCATTGAGTTAGATATGGTTGAGTTAAAATGGAATAAATACAATGATGGTGAAGTAGTAAAATCCAGTACTCTTGAAGACAAGCCTGATTCTGTTAAGGAAATTAGTTACATGCGCCCAAACAATAATGGTCATGAAGAAATGCAGCCATTTGAAGCCGAAGCCAACATGAATGCATCTGATGGAGACTTTGAATCAAGGCTATATACTTCTGTTTATAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

417

Amino Acids

46.72

Weight (kDa)

6.03

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	113 - 246	1.6e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	136 - 244	1.1e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1245
AccI	GTMKAC	1 cut(s)	801
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	2 cut(s)	680, 1096
AgsI	TTSAA	7 cut(s)	163, 437, 767, 911, 1103, 1181, 1220
AleI	CACNNNNGTG	1 cut(s)	605
AloI	GAACNNNNNNTCC	2 cut(s)	722, 754
AluBI	AGCT	7 cut(s)	136, 191, 199, 431, 440, 584, 830
AluI	AGCT	7 cut(s)	136, 191, 199, 431, 440, 584, 830
Alw26I	GTCTC	2 cut(s)	714, 1206
AlwI	GGATC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	4 cut(s)	440, 507, 916, 1171
ApoI	RAATTY	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	1143
AsuC2I	CCSGG	2 cut(s)	270, 418
AsuHPI	GGTGA	1 cut(s)	1088
BaeGI	GKGCMC	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	563
BbsI	GAAGAC	2 cut(s)	239, 1110
BbvI	GCAGC	4 cut(s)	427, 519, 928, 1183
BccI	CCATC	3 cut(s)	830, 1067, 1202
BcnI	CCSGG	2 cut(s)	270, 418
BcoDI	GTCTC	2 cut(s)	714, 1206
BfaI	CTAG	3 cut(s)	141, 207, 1026
BfmI	CTRYAG	1 cut(s)	861
BisI	GCNGC	4 cut(s)	441, 508, 917, 1172
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	4 cut(s)	442, 509, 918, 1173
BmcAI	AGTACT	1 cut(s)	1096
Bme1390I	CCNGG	2 cut(s)	270, 418
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	270, 418
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	664, 1211
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	2 cut(s)	239, 1110
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	2 cut(s)	465, 606
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuMI	CCSGG	2 cut(s)	270, 418
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	2 cut(s)	269, 726
BsaXI	ACNNNNNCTCC	7 cut(s)	26, 579, 609, 722, 752, 794, 824
Bse1I	ACTGG	5 cut(s)	49, 145, 413, 482, 1092
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	269, 726
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	201, 268, 627
BseNI	ACTGG	5 cut(s)	49, 145, 413, 482, 1092
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	4 cut(s)	427, 519, 928, 1183
BshFI	GGCC	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	269, 418
BsmAI	GTCTC	2 cut(s)	714, 1206
BsmI	GAATGC	2 cut(s)	58, 1204
BsnI	GGCC	1 cut(s)	563
Bso31I	GGTCTC	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	3 cut(s)	572, 976, 1015
Bsp1720I	GCTNAGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	3 cut(s)	200, 267, 628
BspHI	TCATGA	1 cut(s)	1159
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	714
BsrDI	GCAATG	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	5 cut(s)	49, 145, 413, 482, 1092
BssECI	CCNNGG	2 cut(s)	269, 726
BssMI	GATC	3 cut(s)	572, 976, 1015
BssT1I	CCWWGG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	97, 377, 683
BstAPI	GCANNNNNTGC	1 cut(s)	922
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	69, 201
BstDEI	CTNAG	7 cut(s)	187, 254, 279, 320, 403, 636, 826
BstHHI	GCGC	1 cut(s)	1143
BstKTI	GATC	3 cut(s)	575, 979, 1018
BstMAI	GTCTC	2 cut(s)	714, 1206
BstMBI	GATC	3 cut(s)	572, 976, 1015
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 827, 922
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	2 cut(s)	268, 416
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	4 cut(s)	427, 519, 928, 1183
BstV2I	GAAGAC	2 cut(s)	239, 1110
BstX2I	RGATCY	1 cut(s)	572
BstXI	CCANNNNNNTGG	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	563
BtsIMutI	CAGTG	3 cut(s)	14, 102, 489
Cac8I	GCNNGC	2 cut(s)	69, 201
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	1159
CfoI	GCGC	1 cut(s)	1143
Csp6I	GTAC	2 cut(s)	679, 1095
CviAII	CATG	8 cut(s)	464, 536, 805, 922, 1013, 1138, 1160, 1195
CviQI	GTAC	2 cut(s)	679, 1095
DdeI	CTNAG	7 cut(s)	187, 254, 279, 320, 403, 636, 826
DpnI	GATC	3 cut(s)	574, 978, 1017
DpnII	GATC	3 cut(s)	572, 976, 1015
EaeI	YGGCCR	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	726
Eco31I	GGTCTC	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	726
EcoT22I	ATGCAT	2 cut(s)	646, 1204
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	8 cut(s)	467, 539, 808, 925, 1016, 1141, 1163, 1198
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	8 cut(s)	463, 535, 804, 921, 1012, 1137, 1159, 1194
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	4 cut(s)	441, 508, 917, 1172
Fsp4HI	GCNGC	4 cut(s)	441, 508, 917, 1172
FspBI	CTAG	3 cut(s)	141, 207, 1026
GlaI	GCGC	1 cut(s)	1142
GluI	GCNGC	4 cut(s)	441, 508, 917, 1172
GsuI	CTGGAG	2 cut(s)	465, 606
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	2 cut(s)	269, 418
HhaI	GCGC	1 cut(s)	1143
Hin1II	CATG	8 cut(s)	467, 539, 808, 925, 1016, 1141, 1163, 1198
Hin6I	GCGC	1 cut(s)	1141
HinP1I	GCGC	1 cut(s)	1141
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	265, 866, 1115, 1220
HpaII	CCGG	2 cut(s)	269, 418
HphI	GGTGA	1 cut(s)	1088
Hpy166II	GTNNAC	4 cut(s)	93, 679, 802, 852
Hpy188III	TCNNGA	4 cut(s)	434, 873, 1100, 1160
Hpy8I	GTNNAC	4 cut(s)	93, 679, 802, 852
HpyAV	CCTTC	5 cut(s)	41, 42, 727, 769, 793
HpyCH4III	ACNGT	3 cut(s)	97, 377, 683
HpyCH4V	TGCA	6 cut(s)	67, 644, 790, 884, 1171, 1202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 827, 922
HpyF3I	CTNAG	7 cut(s)	187, 254, 279, 320, 403, 636, 826
Hsp92II	CATG	8 cut(s)	467, 539, 808, 925, 1016, 1141, 1163, 1198
HspAI	GCGC	1 cut(s)	1141
Kzo9I	GATC	3 cut(s)	572, 976, 1015
LmnI	GCTCC	2 cut(s)	76, 196
Lsp1109I	GCAGC	4 cut(s)	427, 519, 928, 1183
LweI	GCATC	2 cut(s)	664, 1211
MaeI	CTAG	3 cut(s)	141, 207, 1026
MaeIII	GTNAC	3 cut(s)	12, 97, 1133
MalI	GATC	3 cut(s)	574, 978, 1017
MboI	GATC	3 cut(s)	572, 976, 1015
MboII	GAAGA	3 cut(s)	239, 1115, 1175
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	617
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	5 cut(s)	20, 290, 385, 704, 1128
MluNI	TGGCCA	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	6 cut(s)	123, 261, 401, 489, 581, 881
Mox20I	TGGCCA	1 cut(s)	563
Mph1103I	ATGCAT	2 cut(s)	646, 1204
MroXI	GAANNNNTTC	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	4 cut(s)	501, 647, 1052, 1122
MslI	CAYNNNNRTG	2 cut(s)	155, 605
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	2 cut(s)	269, 418
MspR9I	CCNGG	2 cut(s)	270, 418
Mva1269I	GAATGC	2 cut(s)	58, 1204
MwoI	GCNNNNNNNGC	3 cut(s)	437, 827, 922
NciI	CCSGG	2 cut(s)	270, 418
NdeII	GATC	3 cut(s)	572, 976, 1015
NlaIII	CATG	8 cut(s)	467, 539, 808, 925, 1016, 1141, 1163, 1198
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	12, 97
NsiI	ATGCAT	2 cut(s)	646, 1204
NspI	RCATGY	1 cut(s)	1141
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	1159
PctI	GAATGC	2 cut(s)	58, 1204
PdmI	GAANNNNTTC	1 cut(s)	737
PfeI	GAWTC	4 cut(s)	265, 866, 1115, 1220
PkrI	GCNGC	4 cut(s)	442, 509, 918, 1173
PsiI	TTATAA	1 cut(s)	1245
PspN4I	GGNNCC	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	2 cut(s)	680, 1096
RsaNI	GTAC	2 cut(s)	679, 1095
RseI	CAYNNNNRTG	2 cut(s)	155, 605
SaqAI	TTAA	4 cut(s)	501, 647, 1052, 1122
SatI	GCNGC	4 cut(s)	441, 508, 917, 1172
Sau3AI	GATC	3 cut(s)	572, 976, 1015
ScaI	AGTACT	1 cut(s)	1096
ScrFI	CCNGG	2 cut(s)	270, 418
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	2 cut(s)	664, 1211
SfcI	CTRYAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	2 cut(s)	155, 605
Sse9I	AATT	5 cut(s)	20, 290, 385, 704, 1128
SspMI	CTAG	3 cut(s)	141, 207, 1026
StyD4I	CCNGG	2 cut(s)	268, 416
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	3 cut(s)	97, 377, 683
TaqI	TCGA	1 cut(s)	773
TasI	AATT	5 cut(s)	20, 290, 385, 704, 1128
TatI	WGTACW	2 cut(s)	678, 1094
TfiI	GAWTC	4 cut(s)	265, 866, 1115, 1220
Tru1I	TTAA	4 cut(s)	501, 647, 1052, 1122
Tru9I	TTAA	4 cut(s)	501, 647, 1052, 1122
TscAI	CASTG	3 cut(s)	21, 102, 489
TseFI	GTSAC	2 cut(s)	12, 97
TseI	GCWGC	4 cut(s)	440, 507, 916, 1171
Tsp45I	GTSAC	2 cut(s)	12, 97
TspDTI	ATGAA	7 cut(s)	139, 480, 746, 821, 962, 1176, 1211
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	3 cut(s)	21, 102, 489
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	1141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	607, 933
XmiI	GTMKAC	1 cut(s)	801
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	3 cut(s)	141, 207, 1026
ZrmI	AGTACT	1 cut(s)	1096
Zsp2I	ATGCAT	2 cut(s)	646, 1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.