Prupe.8G099000_v2.0.a1

Organ-specific protein S2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001115
Physical Location & Seq
Reverse (-)
13058572 .. 13059648
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G099000.1

Sequence Viewer

Length: 444 bp
ATGAAGTTCCTTTGTGCCACCTTAGCACTCTTCTCTCTTCTTTTGTTTGCTAAAACTATAGAATCAAGAGGAGGTGCAGGAATTGACTGGGAATATATCAGGAAAGAGCAACCCCTTATGCCAGGCCTCCTTGTTGAACATTCTGATTCAACACCAAAAGAAGAAGCCAACTGCCATGAAAATACAGAAAAACCTGTTGTTGAGACTATGGAATTTGAACCCAGACCGTTTATCTCAGCTTACAATGATGAAGAAGGCAAAGCAGAGTTCTCTGCCAAAGACTCTAAGCCAAAGTCCCAGGCTTACCCTGACAAGCAGCCACTTGAGTCCAAAGAAAATAAGCAGTCATTTGATGAAGACTTTGATCCAAGGAAATATATATTTATTTTTACAATAACTAATAGAACATCAAGTGTGAGTTGGTGCTATTTAAAAATAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

148

Amino Acids

16.94

Weight (kDa)

5.17

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 212
AgsI TTSAA 3 cut(s) 137, 150, 218
AjnI CCWGG 2 cut(s) 121, 297
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 359
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 123, 299
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 123, 299
BmrFI CCNGG 2 cut(s) 123, 299
BmrI ACTGGG 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 297, 368
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 2 cut(s) 123, 299
BseDI CCNNGG 2 cut(s) 297, 368
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 364
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 248
BspPI GGATC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 297, 368
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 123, 299
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 35, 42
BstDEI CTNAG 3 cut(s) 22, 235, 285
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 2 cut(s) 123, 299
BstSCI CCNGG 2 cut(s) 121, 297
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 126
CviAII CATG 1 cut(s) 176
CviJI RGCY 6 cut(s) 126, 167, 239, 289, 302, 319
CviKI_1 RGCY 6 cut(s) 126, 167, 239, 289, 302, 319
DdeI CTNAG 3 cut(s) 22, 235, 285
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DraI TTTAAA 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 35, 42
EarI CTCTTC 2 cut(s) 35, 42
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 121, 297
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 1 cut(s) 179
FaiI YATR 7 cut(s) 59, 96, 119, 177, 209, 378, 380
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 317
HaeIII GGCC 1 cut(s) 126
Hin1II CATG 1 cut(s) 179
HinfI GANTC 4 cut(s) 62, 146, 281, 326
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 66, 100
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 3 cut(s) 22, 235, 285
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 1 cut(s) 364
Lsp1109I GCAGC 1 cut(s) 328
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 5 cut(s) 22, 29, 173, 263, 368
MluCI AATT 2 cut(s) 81, 212
MlyI GAGTC 2 cut(s) 275, 335
MnlI CCTC 3 cut(s) 62, 65, 137
MseI TTAA 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 123, 299
MvaI CCWGG 2 cut(s) 123, 299
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 364
NlaIII CATG 1 cut(s) 179
PceI AGGCCT 1 cut(s) 126
PfeI GAWTC 2 cut(s) 62, 146
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 2 cut(s) 275, 334
PpsI GAGTC 2 cut(s) 275, 334
Psp6I CCWGG 2 cut(s) 121, 297
PspGI CCWGG 2 cut(s) 121, 297
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 1 cut(s) 364
SchI GAGTC 2 cut(s) 275, 335
ScrFI CCNGG 2 cut(s) 123, 299
SetI ASST 4 cut(s) 23, 76, 196, 241
SfcI CTRYAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 81, 212
SseBI AGGCCT 1 cut(s) 126
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 121, 297
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 228
TasI AATT 2 cut(s) 81, 212
TfiI GAWTC 2 cut(s) 62, 146
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 4 cut(s) 17, 192, 264, 369
XapI RAATTY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.