Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Reverse (-)

12623920 .. 12645200

Gene Structure 21281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTCCGATTCTCTTGCTTTGTCGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCACTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGATCCACCACTATCAAATTTGCAAGTATTTTGCTCCTCAGCCCCACCTCACTGGCAAAAGGTCAGCAATGGAATCGCCACCAGATGGGTTTCTCTGTTTTGCATTGCCAGTTTCTTCTTGGGTGTTCTTGTTATCAACAGGAGTTTTGGTTGGAGTTTTAACTTTTTGGTGGCCAACTGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

5.43

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB7I	CCANNNNNTGG	1 cut(s)	189
AclWI	GGATC	4 cut(s)	56, 69, 101, 114
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	189
AlwI	GGATC	4 cut(s)	56, 69, 101, 114
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	278
BamHI	GGATCC	2 cut(s)	61, 106
BbvCI	CCTCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	183
BcgI	CGANNNNNNTGC	3 cut(s)	30, 160, 194
BfuAI	ACCTGC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	63, 108
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	4 cut(s)	75, 161, 213, 287
Bse3DI	GCAATG	2 cut(s)	178, 207
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	2 cut(s)	178, 207
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	4 cut(s)	75, 161, 213, 287
BseRI	GAGGAG	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	1 cut(s)	278
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	54, 61, 106
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	63, 108
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	4 cut(s)	56, 69, 101, 114
BsrDI	GCAATG	2 cut(s)	178, 207
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	4 cut(s)	75, 161, 213, 287
BssMI	GATC	3 cut(s)	54, 61, 106
BstAUI	TGTACA	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	142
BstKTI	GATC	3 cut(s)	57, 64, 109
BstMBI	GATC	3 cut(s)	54, 61, 106
BstX2I	RGATCY	2 cut(s)	61, 106
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	2 cut(s)	61, 106
BsuRI	GGCC	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	68, 154
BveI	ACCTGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	146, 278
CviKI_1	RGCY	2 cut(s)	146, 278
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	3 cut(s)	56, 63, 108
DpnII	GATC	3 cut(s)	54, 61, 106
EaeI	YGGCCR	1 cut(s)	276
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	59, 289
FatI	CATG	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	8, 177
Hpy188I	TCNGA	2 cut(s)	7, 30
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	68, 127, 207
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	54, 61, 106
LmnI	GCTCC	2 cut(s)	40, 143
LpnPI	CCDG	9 cut(s)	29, 56, 78, 89, 142, 199, 226, 229, 268
LweI	GCATC	1 cut(s)	34
MalI	GATC	3 cut(s)	56, 63, 108
MboI	GATC	3 cut(s)	54, 61, 106
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	2 cut(s)	61, 106
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	1 cut(s)	121
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	67, 88, 151, 162
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	278
NdeII	GATC	3 cut(s)	54, 61, 106
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	63, 108
PfeI	GAWTC	2 cut(s)	8, 177
PflMI	CCANNNNNTGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	63, 108
PsuI	RGATCY	2 cut(s)	61, 106
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	54, 61, 106
SetI	ASST	4 cut(s)	48, 99, 154, 168
SfaNI	GCATC	1 cut(s)	34
Sse9I	AATT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	121
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	8, 177
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	75, 161
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	75, 161
Van91I	CCANNNNNTGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.