Organ-specific protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 441 |
| AfaI | GTAC | 1 cut(s) | 292 |
| AgsI | TTSAA | 4 cut(s) | 107, 299, 377, 416 |
| AluBI | AGCT | 1 cut(s) | 26 |
| AluI | AGCT | 1 cut(s) | 26 |
| Alw26I | GTCTC | 1 cut(s) | 402 |
| ApeKI | GCWGC | 2 cut(s) | 112, 367 |
| AspLEI | GCGC | 1 cut(s) | 339 |
| AsuHPI | GGTGA | 1 cut(s) | 284 |
| BbsI | GAAGAC | 1 cut(s) | 306 |
| BbvI | GCAGC | 2 cut(s) | 124, 379 |
| BccI | CCATC | 3 cut(s) | 26, 263, 398 |
| BcoDI | GTCTC | 1 cut(s) | 402 |
| BfaI | CTAG | 1 cut(s) | 222 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BisI | GCNGC | 2 cut(s) | 113, 368 |
| BlsI | GCNGC | 2 cut(s) | 114, 369 |
| BmcAI | AGTACT | 1 cut(s) | 292 |
| BmsI | GCATC | 1 cut(s) | 407 |
| BpiI | GAAGAC | 1 cut(s) | 306 |
| Bse1I | ACTGG | 1 cut(s) | 288 |
| BseNI | ACTGG | 1 cut(s) | 288 |
| BseXI | GCAGC | 2 cut(s) | 124, 379 |
| BsmAI | GTCTC | 1 cut(s) | 402 |
| BsmI | GAATGC | 1 cut(s) | 400 |
| Bsp143I | GATC | 2 cut(s) | 172, 211 |
| BspHI | TCATGA | 1 cut(s) | 355 |
| BsrI | ACTGG | 1 cut(s) | 288 |
| BssMI | GATC | 2 cut(s) | 172, 211 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 118 |
| BstDEI | CTNAG | 1 cut(s) | 22 |
| BstHHI | GCGC | 1 cut(s) | 339 |
| BstKTI | GATC | 2 cut(s) | 175, 214 |
| BstMAI | GTCTC | 1 cut(s) | 402 |
| BstMBI | GATC | 2 cut(s) | 172, 211 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 23, 118 |
| BstNSI | RCATGY | 1 cut(s) | 337 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 2 cut(s) | 124, 379 |
| BstV2I | GAAGAC | 1 cut(s) | 306 |
| CciI | TCATGA | 1 cut(s) | 355 |
| CfoI | GCGC | 1 cut(s) | 339 |
| Csp6I | GTAC | 1 cut(s) | 291 |
| CviAII | CATG | 5 cut(s) | 118, 209, 334, 356, 391 |
| CviJI | RGCY | 8 cut(s) | 26, 87, 115, 307, 370, 380, 386, 424 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 87, 115, 307, 370, 380, 386, 424 |
| CviQI | GTAC | 1 cut(s) | 291 |
| DdeI | CTNAG | 1 cut(s) | 22 |
| DpnI | GATC | 2 cut(s) | 174, 213 |
| DpnII | GATC | 2 cut(s) | 172, 211 |
| EcoT22I | ATGCAT | 1 cut(s) | 400 |
| FaeI | CATG | 5 cut(s) | 121, 212, 337, 359, 394 |
| FatI | CATG | 5 cut(s) | 117, 208, 333, 355, 390 |
| Fnu4HI | GCNGC | 2 cut(s) | 113, 368 |
| Fsp4HI | GCNGC | 2 cut(s) | 113, 368 |
| FspBI | CTAG | 1 cut(s) | 222 |
| GlaI | GCGC | 1 cut(s) | 338 |
| GluI | GCNGC | 2 cut(s) | 113, 368 |
| HhaI | GCGC | 1 cut(s) | 339 |
| Hin1II | CATG | 5 cut(s) | 121, 212, 337, 359, 394 |
| Hin6I | GCGC | 1 cut(s) | 337 |
| HinP1I | GCGC | 1 cut(s) | 337 |
| HinfI | GANTC | 3 cut(s) | 62, 311, 416 |
| HphI | GGTGA | 1 cut(s) | 284 |
| Hpy166II | GTNNAC | 1 cut(s) | 48 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 216, 403 |
| Hpy188III | TCNNGA | 3 cut(s) | 69, 296, 356 |
| Hpy8I | GTNNAC | 1 cut(s) | 48 |
| HpyCH4V | TGCA | 3 cut(s) | 80, 367, 398 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 23, 118 |
| HpyF3I | CTNAG | 1 cut(s) | 22 |
| Hsp92II | CATG | 5 cut(s) | 121, 212, 337, 359, 394 |
| HspAI | GCGC | 1 cut(s) | 337 |
| Kzo9I | GATC | 2 cut(s) | 172, 211 |
| LpnPI | CCDG | 3 cut(s) | 66, 301, 321 |
| Lsp1109I | GCAGC | 2 cut(s) | 124, 379 |
| LweI | GCATC | 1 cut(s) | 407 |
| MaeI | CTAG | 1 cut(s) | 222 |
| MaeIII | GTNAC | 1 cut(s) | 329 |
| MalI | GATC | 2 cut(s) | 174, 213 |
| MboI | GATC | 2 cut(s) | 172, 211 |
| MboII | GAAGA | 2 cut(s) | 311, 371 |
| MluCI | AATT | 1 cut(s) | 324 |
| MnlI | CCTC | 1 cut(s) | 77 |
| Mph1103I | ATGCAT | 1 cut(s) | 400 |
| MseI | TTAA | 2 cut(s) | 248, 318 |
| Mva1269I | GAATGC | 1 cut(s) | 400 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 23, 118 |
| NdeII | GATC | 2 cut(s) | 172, 211 |
| NlaIII | CATG | 5 cut(s) | 121, 212, 337, 359, 394 |
| NsiI | ATGCAT | 1 cut(s) | 400 |
| NspI | RCATGY | 1 cut(s) | 337 |
| PagI | TCATGA | 1 cut(s) | 355 |
| PctI | GAATGC | 1 cut(s) | 400 |
| PfeI | GAWTC | 3 cut(s) | 62, 311, 416 |
| PkrI | GCNGC | 2 cut(s) | 114, 369 |
| PsiI | TTATAA | 1 cut(s) | 441 |
| RsaI | GTAC | 1 cut(s) | 292 |
| RsaNI | GTAC | 1 cut(s) | 291 |
| SaqAI | TTAA | 2 cut(s) | 248, 318 |
| SatI | GCNGC | 2 cut(s) | 113, 368 |
| Sau3AI | GATC | 2 cut(s) | 172, 211 |
| ScaI | AGTACT | 1 cut(s) | 292 |
| SetI | ASST | 2 cut(s) | 28, 223 |
| SfaNI | GCATC | 1 cut(s) | 407 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| Sse9I | AATT | 1 cut(s) | 324 |
| SspMI | CTAG | 1 cut(s) | 222 |
| TasI | AATT | 1 cut(s) | 324 |
| TatI | WGTACW | 1 cut(s) | 290 |
| TfiI | GAWTC | 3 cut(s) | 62, 311, 416 |
| Tru1I | TTAA | 2 cut(s) | 248, 318 |
| Tru9I | TTAA | 2 cut(s) | 248, 318 |
| TseI | GCWGC | 2 cut(s) | 112, 367 |
| TspDTI | ATGAA | 4 cut(s) | 17, 158, 372, 407 |
| XceI | RCATGY | 1 cut(s) | 337 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 222 |
| ZrmI | AGTACT | 1 cut(s) | 292 |
| Zsp2I | ATGCAT | 1 cut(s) | 400 |