Prupe.8G098800_v2.0.a1

Organ-specific protein S2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001115
Physical Location & Seq
Reverse (-)
13041128 .. 13043486
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G098800.2

Sequence Viewer

Length: 396 bp
ATGAAGTCCCTTTGTGCTATCTTAGCTCTTTTCTCTCTTCTTTTGTTTGCCAAAACTACAGATTCAAGAAGAGATGCCGGGAAATACTGGAAAAATGTCATGCAAGAGCAACCTATGCCACGGGCAATTGAAGGCCTCCTTGTTGATATTTCTGATTCAACACCAAAAGAGAAAGCCGACTGCCATGAAAAAGTGAAAAAACCTTTTGTTGAGGTTGAGGAATTTGAACCCAGACCCAGTCTCACATCCTACAATCATGATGAAACTAAAGCAAAGCTCTCTTCCAAAGACAATGCTGGTCCTAAAGCTAAGCAGTCATTTGCAGCAAAAGAATATAAGCAGCCATTTGAGGAAGATTTTGAGCCAAGGCCAAGTGCTTCGGTTTACAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

132

Amino Acids

14.89

Weight (kDa)

6.16

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 221
AgsI TTSAA 4 cut(s) 66, 131, 159, 227
AluBI AGCT 3 cut(s) 26, 277, 308
AluI AGCT 3 cut(s) 26, 277, 308
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 2 cut(s) 133, 368
ApeKI GCWGC 2 cut(s) 323, 340
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 335, 352
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 324, 341
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 2 cut(s) 325, 342
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 119, 365
Bse1I ACTGG 2 cut(s) 92, 237
BseDI CCNNGG 2 cut(s) 119, 365
BseGI GGATG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 92, 237
BseXI GCAGC 2 cut(s) 335, 352
BshFI GGCC 2 cut(s) 135, 370
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 2 cut(s) 135, 370
Bsp1720I GCTNAGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 135, 370
BspHI TCATGA 1 cut(s) 256
BsrI ACTGG 2 cut(s) 92, 237
BssECI CCNNGG 2 cut(s) 119, 365
BssT1I CCWWGG 1 cut(s) 365
Bst6I CTCTTC 3 cut(s) 42, 64, 286
BstAPI GCANNNNNTGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 22, 309
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 245
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 23, 115
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 335, 352
BsuRI GGCC 2 cut(s) 135, 370
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 245
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 299
CviAII CATG 3 cut(s) 100, 185, 257
CviJI RGCY 8 cut(s) 26, 135, 176, 277, 308, 343, 364, 370
CviKI_1 RGCY 8 cut(s) 26, 135, 176, 277, 308, 343, 364, 370
DdeI CTNAG 2 cut(s) 22, 309
Eam1104I CTCTTC 3 cut(s) 42, 64, 286
EarI CTCTTC 3 cut(s) 42, 64, 286
Eco130I CCWWGG 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 3 cut(s) 103, 188, 260
FaiI YATR 5 cut(s) 101, 116, 186, 258, 336
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 3 cut(s) 99, 184, 256
Fnu4HI GCNGC 2 cut(s) 324, 341
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 324, 341
GluI GCNGC 2 cut(s) 324, 341
HaeIII GGCC 2 cut(s) 135, 370
HapII CCGG 1 cut(s) 78
Hin1II CATG 3 cut(s) 103, 188, 260
HinfI GANTC 2 cut(s) 62, 155
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 66, 257
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 103, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 115
HpyF3I CTNAG 2 cut(s) 22, 309
Hsp92II CATG 3 cut(s) 103, 188, 260
LpnPI CCDG 5 cut(s) 73, 91, 244, 250, 282
Lsp1109I GCAGC 2 cut(s) 335, 352
LweI GCATC 1 cut(s) 64
MboII GAAGA 4 cut(s) 29, 81, 273, 365
MfeI CAATTG 1 cut(s) 126
MluCI AATT 2 cut(s) 126, 221
MnlI CCTC 4 cut(s) 146, 205, 211, 343
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 79
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 23, 115
NciI CCSGG 1 cut(s) 79
NlaIII CATG 3 cut(s) 103, 188, 260
PagI TCATGA 1 cut(s) 256
PceI AGGCCT 1 cut(s) 135
PfeI GAWTC 2 cut(s) 62, 155
PflFI GACNNNGTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 325, 342
PspPI GGNCC 1 cut(s) 299
PsyI GACNNNGTC 1 cut(s) 237
SatI GCNGC 2 cut(s) 324, 341
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 79
SetI ASST 6 cut(s) 28, 115, 205, 216, 279, 310
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 299
Sse9I AATT 2 cut(s) 126, 221
SseBI AGGCCT 1 cut(s) 135
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 365
TasI AATT 2 cut(s) 126, 221
TfiI GAWTC 2 cut(s) 62, 155
TseI GCWGC 2 cut(s) 323, 340
TspDTI ATGAA 3 cut(s) 17, 201, 276
Tth111I GACNNNGTC 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.