Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Reverse (-)

25121502 .. 25123406

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTTCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGTAAATATACCTGTGCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

120

Amino Acids

13.51

Weight (kDa)

5.06

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 102	2.5e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	278, 291
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	4 cut(s)	82, 197, 206, 239
AluI	AGCT	4 cut(s)	82, 197, 206, 239
AlwI	GGATC	2 cut(s)	278, 291
ApeKI	GCWGC	2 cut(s)	206, 332
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BamHI	GGATCC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	193, 344
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	207, 245, 333
BlsI	GCNGC	3 cut(s)	208, 246, 334
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpuMI	CCSGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	193, 344
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	276, 283
BspACI	CCGC	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	278, 291
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	2 cut(s)	276, 283
Bst4CI	ACNGT	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	17, 169
BstKTI	GATC	2 cut(s)	279, 286
BstMBI	GATC	2 cut(s)	276, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	193, 344
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	230, 280
CviJI	RGCY	4 cut(s)	82, 197, 206, 239
CviKI_1	RGCY	4 cut(s)	82, 197, 206, 239
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	17, 169
DpnI	GATC	2 cut(s)	278, 285
DpnII	GATC	2 cut(s)	276, 283
Eco47I	GGWCC	1 cut(s)	146
FaeI	CATG	2 cut(s)	233, 283
FaiI	YATR	6 cut(s)	37, 93, 101, 231, 281, 347
FatI	CATG	2 cut(s)	229, 279
Fnu4HI	GCNGC	3 cut(s)	207, 245, 333
Fsp4HI	GCNGC	3 cut(s)	207, 245, 333
GluI	GCNGC	3 cut(s)	207, 245, 333
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	2 cut(s)	233, 283
HindIII	AAGCTT	1 cut(s)	237
HpaII	CCGG	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	67, 252
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	4, 118, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	17, 169
Hsp92II	CATG	2 cut(s)	233, 283
Kzo9I	GATC	2 cut(s)	276, 283
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	7 cut(s)	104, 147, 160, 197, 251, 300, 311
Lsp1109I	GCAGC	2 cut(s)	193, 344
LweI	GCATC	1 cut(s)	256
MalI	GATC	2 cut(s)	278, 285
MboI	GATC	2 cut(s)	276, 283
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	336
MnlI	CCTC	3 cut(s)	167, 289, 310
MslI	CAYNNNNRTG	1 cut(s)	326
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	276, 283
NlaIII	CATG	2 cut(s)	233, 283
NlaIV	GGNNCC	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	208, 246, 334
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	3 cut(s)	207, 245, 333
Sau3AI	GATC	2 cut(s)	276, 283
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	336
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	206, 332
TspDTI	ATGAA	2 cut(s)	246, 326
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.