Prupe.8G098600_v2.0.a1

Organ-specific protein S2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001115
Physical Location & Seq
Reverse (-)
13023889 .. 13025499
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G098600.1

Sequence Viewer

Length: 711 bp
ATGAAGTCCCTTTGTGCTATCTTAGCTCTTTTCTCTCTTCTTTTGTTTGTCAAAACAACATATTCAAGAAGAGATGTCGGGAAATACTGGAAAAATGTCATGAAAGAGCAACCTATGCCACAGGCAATTGAAGGCCTCCTTGTTGATATTTCTGATTCAACACCAAAAGAGAAAGCCGACTGCCATGAAAAAGTGAAAAAACCTTTTGTTGAGGTTGACGTTGAGGTTGAGGAATTTGAACCAAAGCCTAATGCTTTGGTTTACAATGCAGTTGCTGCAAAAGAAGATAAGCAGCCATTTGTGAAAGATTTTGAGCCCAGGCCAAATGCTTTGGTTTACAATGCATTTGCAGCAAAAGAAGATAAGCAGCCATTTGTGAAAGATATTGAGCCCAGGCCAAATGCTTTGGTTTACAATGCATTTGCAGCAAAAGAAGATAAGCAGCCATTTGTGAAAGACTTTGAGCCCAGGCCAAATGCTTTGGTTTACAATGCATTTGCAGCAAAAGAAGATAAGCAGCCATTTGTGAAAGATTTTGAGCCCAGGCCAAATGCTTTGGTTTACAACGCATTTGCAGCAAAAGAAGATAAGCAGCCATTTGTGAAAGACTTTGAGCCCAGGCCAAATGCAAAATTTGCAGCAAAAGAAGATCAACAGCCATTTGTGAAAGATTTTGAGCCAAGACCAAATGCTTTGGTTTACAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

237

Amino Acids

27.08

Weight (kDa)

5.75

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 233, 632
AgsI TTSAA 4 cut(s) 66, 131, 159, 239
AjnI CCWGG 5 cut(s) 317, 392, 467, 542, 617
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 6 cut(s) 133, 320, 395, 470, 545, 620
ApoI RAATTY 2 cut(s) 233, 632
BanII GRGCYC 5 cut(s) 318, 393, 468, 543, 618
BciT130I CCWGG 5 cut(s) 319, 394, 469, 544, 619
Bme1390I CCNGG 5 cut(s) 319, 394, 469, 544, 619
BmrFI CCNGG 5 cut(s) 319, 394, 469, 544, 619
BsaJI CCNNGG 5 cut(s) 317, 392, 467, 542, 617
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 5 cut(s) 319, 394, 469, 544, 619
BseDI CCNNGG 5 cut(s) 317, 392, 467, 542, 617
BseNI ACTGG 1 cut(s) 92
BshFI GGCC 6 cut(s) 135, 322, 397, 472, 547, 622
BsnI GGCC 6 cut(s) 135, 322, 397, 472, 547, 622
Bsp1286I GDGCHC 5 cut(s) 318, 393, 468, 543, 618
Bsp143I GATC 1 cut(s) 649
BspANI GGCC 6 cut(s) 135, 322, 397, 472, 547, 622
BspHI TCATGA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 5 cut(s) 317, 392, 467, 542, 617
BssMI GATC 1 cut(s) 649
Bst2UI CCWGG 5 cut(s) 319, 394, 469, 544, 619
Bst6I CTCTTC 2 cut(s) 42, 64
BstAPI GCANNNNNTGC 3 cut(s) 115, 275, 635
BstDEI CTNAG 1 cut(s) 22
BstKTI GATC 1 cut(s) 652
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 8 cut(s) 23, 115, 275, 350, 425, 500, 575, 635
BstNI CCWGG 5 cut(s) 319, 394, 469, 544, 619
BstSCI CCNGG 5 cut(s) 317, 392, 467, 542, 617
BsuRI GGCC 6 cut(s) 135, 322, 397, 472, 547, 622
CaiI CAGNNNCTG 1 cut(s) 275
CciI TCATGA 1 cut(s) 99
CviAII CATG 2 cut(s) 100, 185
DdeI CTNAG 1 cut(s) 22
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 42, 64
EarI CTCTTC 2 cut(s) 42, 64
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 5 cut(s) 318, 393, 468, 543, 618
EcoRII CCWGG 5 cut(s) 317, 392, 467, 542, 617
EcoT22I ATGCAT 3 cut(s) 346, 421, 496
EcoT38I GRGCYC 5 cut(s) 318, 393, 468, 543, 618
FaeI CATG 2 cut(s) 103, 188
FaiI YATR 4 cut(s) 61, 101, 116, 186
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 2 cut(s) 99, 184
FriOI GRGCYC 5 cut(s) 318, 393, 468, 543, 618
HaeIII GGCC 6 cut(s) 135, 322, 397, 472, 547, 622
Hin1II CATG 2 cut(s) 103, 188
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 155
Hpy166II GTNNAC 7 cut(s) 217, 262, 337, 412, 487, 562, 700
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 66, 79, 100
Hpy8I GTNNAC 7 cut(s) 217, 262, 337, 412, 487, 562, 700
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 115, 275, 350, 425, 500, 575, 635
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 2 cut(s) 103, 188
Kzo9I GATC 1 cut(s) 649
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 8 cut(s) 29, 81, 296, 371, 446, 521, 596, 659
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 5 cut(s) 318, 393, 468, 543, 618
MluCI AATT 3 cut(s) 126, 233, 632
MnlI CCTC 4 cut(s) 146, 205, 217, 223
Mph1103I ATGCAT 3 cut(s) 346, 421, 496
MspR9I CCNGG 5 cut(s) 319, 394, 469, 544, 619
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 5 cut(s) 319, 394, 469, 544, 619
MwoI GCNNNNNNNGC 8 cut(s) 23, 115, 275, 350, 425, 500, 575, 635
NdeII GATC 1 cut(s) 649
NlaIII CATG 2 cut(s) 103, 188
NsiI ATGCAT 3 cut(s) 346, 421, 496
PagI TCATGA 1 cut(s) 99
PceI AGGCCT 1 cut(s) 135
PfeI GAWTC 1 cut(s) 155
Psp6I CCWGG 5 cut(s) 317, 392, 467, 542, 617
PspGI CCWGG 5 cut(s) 317, 392, 467, 542, 617
PstNI CAGNNNCTG 1 cut(s) 275
Sau3AI GATC 1 cut(s) 649
ScrFI CCNGG 5 cut(s) 319, 394, 469, 544, 619
SduI GDGCHC 5 cut(s) 318, 393, 468, 543, 618
SetI ASST 6 cut(s) 28, 115, 205, 216, 222, 228
Sse9I AATT 3 cut(s) 126, 233, 632
SseBI AGGCCT 1 cut(s) 135
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 5 cut(s) 317, 392, 467, 542, 617
TaiI ACGT 1 cut(s) 222
TasI AATT 3 cut(s) 126, 233, 632
TfiI GAWTC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 17, 116, 201
XapI RAATTY 2 cut(s) 233, 632
Zsp2I ATGCAT 3 cut(s) 346, 421, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.