Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034069.1

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Forward (+)

7991 .. 8744

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034069.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaactccctttatgccatcttagctctcctctcacttcttttgttcactacaactgtacattcaagaataggcgcaggaggctacatgaaaaattccattgaaaagcaacccatgccagcagactcatggaagctcgtaaaagaacaggttgagcttaacaatgttgatctatctgatgataaggctgagaaaaccaactgcaatgaaaatgggaaacatagcagtgaatttgagattgtcgagtttgaaccgagacctgatatcacaatttaccatggtgacattgtcgagtctgaaccgagacctgatgtcacaatttaccatggtgacattgaagtaacagagtccagaactcttaaagacgagctagagtctaaggccataggtaacatgcaccctaaggataaaggtcctaaagataagctgccatttgaagtcaaagccaaaaggcatgcatttgaagaagattttgagccaaggccaaatatttctgtgtaccatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Organ_specific

Protein Analysis

169

Amino Acids

19.24

Weight (kDa)

5.09

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	94, 230
AfaI	GTAC	2 cut(s)	60, 500
AgsI	TTSAA	6 cut(s)	66, 104, 251, 338, 437, 464
AhdI	GACNNNNNGTC	1 cut(s)	311
AluBI	AGCT	5 cut(s)	26, 136, 157, 370, 427
AluI	AGCT	5 cut(s)	26, 136, 157, 370, 427
Alw26I	GTCTC	2 cut(s)	250, 298
AoxI	GGCC	2 cut(s)	381, 482
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	94, 230
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	293, 341
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	250, 298
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	413
BmeRI	GACNNNNNGTC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	413
BsaI	GGTCTC	2 cut(s)	250, 298
BsaJI	CCNNGG	3 cut(s)	277, 325, 479
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	3 cut(s)	277, 325, 479
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	414
BshFI	GGCC	2 cut(s)	383, 484
BsmAI	GTCTC	2 cut(s)	250, 298
BsnI	GGCC	2 cut(s)	383, 484
Bso31I	GGTCTC	2 cut(s)	250, 298
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	2 cut(s)	277, 325
BspANI	GGCC	2 cut(s)	383, 484
BspCNI	CTCAG	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	250, 298
BsrDI	GCAATG	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	277, 325, 479
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	3 cut(s)	277, 325, 479
Bst4CI	ACNGT	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	120, 456
BstDEI	CTNAG	4 cut(s)	22, 189, 378, 402
BstDSI	CCRYGG	2 cut(s)	277, 325
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	250, 298
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 81, 115
BstNSI	RCATGY	2 cut(s)	397, 458
BstV1I	GCAGC	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	383, 484
BtgI	CCRYGG	2 cut(s)	277, 325
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	120, 456
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	59, 499
CviAII	CATG	8 cut(s)	88, 115, 129, 278, 326, 394, 455, 503
CviQI	GTAC	2 cut(s)	59, 499
DdeI	CTNAG	4 cut(s)	22, 189, 378, 402
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DriI	GACNNNNNGTC	1 cut(s)	311
Eam1105I	GACNNNNNGTC	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	277, 325, 479
Eco31I	GGTCTC	2 cut(s)	250, 298
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	3 cut(s)	277, 325, 479
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	3 cut(s)	277, 325, 479
FaeI	CATG	8 cut(s)	91, 118, 132, 281, 329, 397, 458, 506
FatI	CATG	8 cut(s)	87, 114, 128, 277, 325, 393, 454, 502
Fnu4HI	GCNGC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	383, 484
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	8 cut(s)	91, 118, 132, 281, 329, 397, 458, 506
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	125, 293, 347, 374
HphI	GGTGA	2 cut(s)	293, 341
Hpy166II	GTNNAC	2 cut(s)	48, 499
Hpy188I	TCNGA	2 cut(s)	178, 298
Hpy188III	TCNNGA	2 cut(s)	66, 351
Hpy8I	GTNNAC	2 cut(s)	48, 499
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	204, 397, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 81, 115
HpyF3I	CTNAG	4 cut(s)	22, 189, 378, 402
Hsp92II	CATG	8 cut(s)	91, 118, 132, 281, 329, 397, 458, 506
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	63, 132, 134, 273, 321, 364
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	5 cut(s)	281, 313, 329, 340, 389
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	476, 479
MluCI	AATT	4 cut(s)	94, 230, 270, 318
MlyI	GAGTC	4 cut(s)	119, 302, 356, 383
MnlI	CCTC	2 cut(s)	41, 74
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	2 cut(s)	159, 360
MslI	CAYNNNNRTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	23, 81, 115
NcoI	CCATGG	2 cut(s)	277, 325
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	8 cut(s)	91, 118, 132, 281, 329, 397, 458, 506
NmuCI	GTSAC	3 cut(s)	281, 313, 329
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	2 cut(s)	397, 458
PaeI	GCATGC	1 cut(s)	458
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	4 cut(s)	119, 301, 355, 382
PpsI	GAGTC	4 cut(s)	119, 301, 355, 382
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	60, 500
RsaNI	GTAC	2 cut(s)	59, 499
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	159, 360
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	4 cut(s)	119, 302, 356, 383
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	94, 230, 270, 318
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	1 cut(s)	371
StyI	CCWWGG	3 cut(s)	277, 325, 479
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	243, 291
TasI	AATT	4 cut(s)	94, 230, 270, 318
TatI	WGTACW	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	159, 360
Tru9I	TTAA	2 cut(s)	159, 360
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	3 cut(s)	281, 313, 329
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	3 cut(s)	281, 313, 329
TspDTI	ATGAA	3 cut(s)	17, 104, 222
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	94, 230
XceI	RCATGY	2 cut(s)	397, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XspI	CTAG	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.