Rh6DG109700

Organ-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001115
Physical Location & Seq
Reverse (-)
14410554 .. 14414112
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG109700.1

Sequence Viewer

Length: 555 bp
ATGCTGGCCTTTTCTGCAAGAGTCTACTTGGAAGGTTGCAAGAAAAGCTCTCCAAAACTGTTCCTGGCAGGCTTCTTGCATAGCATTGCAGTCATGAACTCCCTTTGTGCCATCTTAGCTCTCCTCTCACTTCTTTTGTTCACTACAACTGTACATTCAAGAATAGGTGCAGGAGGCTACATGAAAAATTCCATTGAAAAGCAACCCATGCCAGCAGACTTACGGAAGCTCATAAAAGAACAGTTTGAGCTTAACAATGCTGATCTATCTGATGATAAGGCTGAGAAAGCCGACTGCCATGAAAATGGGAAACCTAACATTGAATTTGAGATTGTGGAGTTTGAACCGAGACCTAATATCTCAATTTATCATGATGACAATGAAGTTACTAAGTCCAGAACTTTTGGAGACGAGCCAGAGTCCATGGCCATAGGTAACATGCACCCTAAGGATAATGGTCCACAAGATAAGCTGCCATTTGAAGCCAAAGCCGAAAGGCATGCATTTGAAGAAGATTTTGAGCCAAGGCCAAATATTTCTGTGTACAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Organ_specific

Protein Analysis

184

Amino Acids

20.7

Weight (kDa)

5.18

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Organ_specific PF10950 57 - 183 1.4e-12 Organ specific protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 2 cut(s) 187, 323
AfaI GTAC 2 cut(s) 153, 545
AgsI TTSAA 6 cut(s) 159, 197, 323, 344, 482, 509
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 5 cut(s) 48, 119, 229, 250, 472
AluI AGCT 5 cut(s) 48, 119, 229, 250, 472
Alw26I GTCTC 2 cut(s) 343, 402
AoxI GGCC 3 cut(s) 6, 426, 527
ApeKI GCWGC 1 cut(s) 472
ApoI RAATTY 2 cut(s) 187, 323
AspS9I GGNCC 1 cut(s) 458
AvaII GGWCC 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 428
BbvI GCAGC 1 cut(s) 459
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 343, 402
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 423, 524
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 423, 524
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 459
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 3 cut(s) 8, 428, 529
BsmAI GTCTC 2 cut(s) 343, 402
BsmBI CGTCTC 1 cut(s) 402
BsnI GGCC 3 cut(s) 8, 428, 529
Bso31I GGTCTC 1 cut(s) 343
Bsp1407I TGTACA 2 cut(s) 151, 543
Bsp143I GATC 1 cut(s) 262
Bsp19I CCATGG 1 cut(s) 423
BspANI GGCC 3 cut(s) 8, 428, 529
BspCNI CTCAG 1 cut(s) 274
BspHI TCATGA 2 cut(s) 93, 370
BspTNI GGTCTC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 84
BsrGI TGTACA 2 cut(s) 151, 543
BssECI CCNNGG 2 cut(s) 423, 524
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 423, 524
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 3 cut(s) 60, 151, 243
BstAPI GCANNNNNTGC 1 cut(s) 208
BstAUI TGTACA 2 cut(s) 151, 543
BstC8I GCNNGC 4 cut(s) 6, 70, 213, 501
BstDEI CTNAG 4 cut(s) 115, 282, 390, 447
BstDSI CCRYGG 1 cut(s) 423
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 2 cut(s) 343, 402
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 5 cut(s) 14, 45, 116, 208, 287
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 2 cut(s) 442, 503
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 305
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 8, 428, 529
BtgI CCRYGG 1 cut(s) 423
Cac8I GCNNGC 4 cut(s) 6, 70, 213, 501
CciI TCATGA 2 cut(s) 93, 370
Cfr13I GGNCC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 152, 544
CviAII CATG 8 cut(s) 94, 181, 208, 299, 371, 424, 439, 500
CviQI GTAC 2 cut(s) 152, 544
DdeI CTNAG 4 cut(s) 115, 282, 390, 447
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 423, 524
Eco31I GGTCTC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 423, 524
EcoT22I ATGCAT 1 cut(s) 505
ErhI CCWWGG 2 cut(s) 423, 524
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 8 cut(s) 97, 184, 211, 302, 374, 427, 442, 503
FatI CATG 8 cut(s) 93, 180, 207, 298, 370, 423, 438, 499
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 473
GluI GCNGC 1 cut(s) 473
HaeIII GGCC 3 cut(s) 8, 428, 529
Hin1II CATG 8 cut(s) 97, 184, 211, 302, 374, 427, 442, 503
HinfI GANTC 2 cut(s) 21, 419
Hpy166II GTNNAC 4 cut(s) 25, 141, 461, 544
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 4 cut(s) 94, 159, 371, 396
Hpy8I GTNNAC 4 cut(s) 25, 141, 461, 544
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 60, 151, 243
HpyCH4V TGCA 7 cut(s) 17, 39, 79, 89, 170, 442, 503
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 45, 116, 208, 287
HpyF3I CTNAG 4 cut(s) 115, 282, 390, 447
Hsp92II CATG 8 cut(s) 97, 184, 211, 302, 374, 427, 442, 503
Kzo9I GATC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 50, 54, 77, 156, 225, 409, 429
Lsp1109I GCAGC 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 385, 434
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 521, 524
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 3 cut(s) 187, 323, 363
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 2 cut(s) 30, 428
MnlI CCTC 2 cut(s) 134, 167
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 505
MscI TGGCCA 1 cut(s) 428
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 14, 45, 116, 208, 287
NcoI CCATGG 1 cut(s) 423
NdeII GATC 1 cut(s) 262
NlaIII CATG 8 cut(s) 97, 184, 211, 302, 374, 427, 442, 503
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 2 cut(s) 442, 503
PaeI GCATGC 1 cut(s) 503
PagI TCATGA 2 cut(s) 93, 370
PkrI GCNGC 1 cut(s) 474
PleI GAGTC 2 cut(s) 29, 427
PpsI GAGTC 2 cut(s) 29, 427
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspPI GGNCC 1 cut(s) 458
RsaI GTAC 2 cut(s) 153, 545
RsaNI GTAC 2 cut(s) 152, 544
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 2 cut(s) 30, 428
ScrFI CCNGG 1 cut(s) 65
SinI GGWCC 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 303
SphI GCATGC 1 cut(s) 503
Sse9I AATT 3 cut(s) 187, 323, 363
SspI AATATT 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 423, 524
TaaI ACNGT 3 cut(s) 60, 151, 243
TasI AATT 3 cut(s) 187, 323, 363
TatI WGTACW 2 cut(s) 151, 543
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 1 cut(s) 472
TspDTI ATGAA 4 cut(s) 110, 197, 315, 396
TspGWI ACGGA 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 458
XapI RAATTY 2 cut(s) 187, 323
XceI RCATGY 2 cut(s) 442, 503
XmiI GTMKAC 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.