Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001115

Physical Location & Seq

Genomic Coordinates Reverse (-)

19079787 .. 19081477

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAACTCCCTTTATGCCATCATAGCTCTCCTCTCACTTCTTTTGTTCACTACAACTGTACATTCAAGAATAGGTGCAGGAGGCTACATGAAAAATTCCATTGAAAAGCAACCCATGCCAGCAGACTCATGGAAGCTCGTAAAAGAACAGGTTGAGCTTAACAATGCTGATCTATCTGATGATAAGGCTGAGAAAACCAACTGCAATGAAAATGGGAAACCTAACAGTGAATTTGAGATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACAGTGAAGTAACAGAGTCCAGAACTCTTAAAGACGAGCTAGAGTCTAAGGCCATAGGTAACATGCACCCTAAGGATAAAGGTCCTAAAGATAAGCTGCCATTTGAAGTCAAAGCCAAAAGGCATGCATTTGAAGAAGATTTTGAGCCAAGGCCAAATATTTCTGTGTACAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Organ_specific

Protein Analysis

153

Amino Acids

17.32

Weight (kDa)

5.07

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Organ_specific	PF10950	26 - 152	1.4e-11	Organ specific protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08560
prunus_persica	Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098600_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G098800_v2.0.a1 Prupe.8G099000_v2.0.a1 Prupe.8G099300_v2.0.a1 Prupe.8G099400_v2.0.a1 Prupe.8G099600_v2.0.a1
pyrus_communis	pycom10g06080
rosa_chinensis	RchiOBHm_Chr6g0263911 RchiOBHm_Chr6g0263961
rosa_laevigata	RLG00000014299 RLG00000014301 RLG00000014304
rosa_multiflora	Rmu_co8358715.1_g000001 Rmu_sc0002112.1_g000016 Rmu_sc0002112.1_g000024 Rmu_sc0012632.1_g000003 Rmu_sc0034069.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431290 Rroxscaffold_176G00431330 Rroxscaffold_176G00431350 Rroxscaffold_7G00203700 Rroxscaffold_7G00203730 Rroxscaffold_7G00203780
rosa_rugosa	Rorug06G0006700 Rorug06G0006900 Rorug06G0007100
rosa_samantha	Rh2AG330700 Rh2BG229300 Rh2CG233200 Rh4BG141700 Rh4DG296100 Rh5AG132100 Rh5AG357800 Rh6AG126900 Rh6AG127500 Rh6AG128000 Rh6BG041500 Rh6BG112800 Rh6BG123100 Rh6BG123300 Rh6BG123400 Rh6BG123800 Rh6CG111000 Rh6CG121600 Rh6CG121800 Rh6CG122000 Rh6CG122500 Rh6DG100600 Rh6DG109000 Rh6DG109200 Rh6DG109700 Rh6DG147300
rosa_wichuraiana	Rw6G011020 Rw6G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	94, 230
AfaI	GTAC	2 cut(s)	60, 452
AgsI	TTSAA	5 cut(s)	66, 104, 251, 389, 416
AhdI	GACNNNNNGTC	1 cut(s)	263
AluBI	AGCT	5 cut(s)	26, 136, 157, 322, 379
AluI	AGCT	5 cut(s)	26, 136, 157, 322, 379
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	333, 434
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	2 cut(s)	94, 230
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	365
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	277, 431
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	277, 431
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	335, 436
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	335, 436
Bso31I	GGTCTC	1 cut(s)	250
Bsp1407I	TGTACA	2 cut(s)	58, 450
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	277
BspANI	GGCC	2 cut(s)	335, 436
BspCNI	CTCAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	211
BsrGI	TGTACA	2 cut(s)	58, 450
BssECI	CCNNGG	2 cut(s)	277, 431
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	2 cut(s)	277, 431
Bst4CI	ACNGT	3 cut(s)	58, 227, 287
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstAUI	TGTACA	2 cut(s)	58, 450
BstC8I	GCNNGC	2 cut(s)	120, 408
BstDEI	CTNAG	3 cut(s)	189, 330, 354
BstDSI	CCRYGG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 115
BstNSI	RCATGY	2 cut(s)	349, 410
BstV1I	GCAGC	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	335, 436
BtgI	CCRYGG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	232, 292
Cac8I	GCNNGC	2 cut(s)	120, 408
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	59, 451
CviAII	CATG	6 cut(s)	88, 115, 129, 278, 346, 407
CviQI	GTAC	2 cut(s)	59, 451
DdeI	CTNAG	3 cut(s)	189, 330, 354
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	277, 431
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	365
EcoT14I	CCWWGG	2 cut(s)	277, 431
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	277, 431
FaeI	CATG	6 cut(s)	91, 118, 132, 281, 349, 410
FaiI	YATR	9 cut(s)	15, 23, 89, 116, 130, 279, 338, 347, 408
FatI	CATG	6 cut(s)	87, 114, 128, 277, 345, 406
Fnu4HI	GCNGC	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	335, 436
Hin1II	CATG	6 cut(s)	91, 118, 132, 281, 349, 410
HinfI	GANTC	3 cut(s)	125, 299, 326
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	48, 451
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	66, 303
Hpy8I	GTNNAC	2 cut(s)	48, 451
HpyCH4III	ACNGT	3 cut(s)	58, 227, 287
HpyCH4V	TGCA	4 cut(s)	77, 204, 349, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 115
HpyF3I	CTNAG	3 cut(s)	189, 330, 354
Hsp92II	CATG	6 cut(s)	91, 118, 132, 281, 349, 410
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	63, 132, 134, 273, 316
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	265, 281, 292, 341
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	428, 431
MluCI	AATT	3 cut(s)	94, 230, 270
MlyI	GAGTC	3 cut(s)	119, 308, 335
MnlI	CCTC	2 cut(s)	41, 74
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	2 cut(s)	159, 312
MwoI	GCNNNNNNNGC	2 cut(s)	23, 115
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	6 cut(s)	91, 118, 132, 281, 349, 410
NmuCI	GTSAC	2 cut(s)	265, 281
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	349, 410
PaeI	GCATGC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	3 cut(s)	119, 307, 334
PpsI	GAGTC	3 cut(s)	119, 307, 334
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
RsaI	GTAC	2 cut(s)	60, 452
RsaNI	GTAC	2 cut(s)	59, 451
SaqAI	TTAA	2 cut(s)	159, 312
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	3 cut(s)	119, 308, 335
SinI	GGWCC	1 cut(s)	365
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	3 cut(s)	94, 230, 270
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	277, 431
TaaI	ACNGT	3 cut(s)	58, 227, 287
TaqI	TCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	94, 230, 270
TatI	WGTACW	2 cut(s)	58, 450
Tru1I	TTAA	2 cut(s)	159, 312
Tru9I	TTAA	2 cut(s)	159, 312
TscAI	CASTG	2 cut(s)	232, 292
TseFI	GTSAC	2 cut(s)	265, 281
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	2 cut(s)	265, 281
TspDTI	ATGAA	3 cut(s)	17, 104, 222
TspRI	CASTG	2 cut(s)	232, 292
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	94, 230
XceI	RCATGY	2 cut(s)	349, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.