Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

28080103 .. 28080824

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTCGCGGCTCATCCCAGTCCCAAGCGACGTCATCTTCCACGGCCTCTCGCCCTGGCGTCGTGGCTCCTCGCGGTTCAGCTGCCGCCACAGCTGGAATGCGCCGCCGTCGTCTCGGCGGAGGAGGCAGCTCCAGCTCCGGAGGCATGAGCGGCGGGGGCGGCTCTGGCGCCGGAAACAACATGCTCAGGTTCTACACCGACGACGCTCCAGGCCTGAAGATCACCCCCACCGTCGTGCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACCGCCCTCCATGTGTTCGGCAAGCTCTACCTCCACCGATCTACAGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

110

Amino Acids

10.81

Weight (kDa)

11.72

Isoelectric Point (pI)

67.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	59 - 98	1.9e-18	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	2 cut(s)	9, 75
AccIII	TCCGGA	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	3 cut(s)	32, 60, 171
AjnI	CCWGG	2 cut(s)	55, 211
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	6 cut(s)	83, 95, 132, 138, 298, 326
AluI	AGCT	6 cut(s)	83, 95, 132, 138, 298, 326
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	2 cut(s)	45, 214
ApeKI	GCWGC	2 cut(s)	83, 129
AspLEI	GCGC	2 cut(s)	105, 173
AsuHPI	GGTGA	2 cut(s)	217, 265
BanI	GGYRCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	70, 141
BceAI	ACGGC	2 cut(s)	60, 93
BciT130I	CCWGG	2 cut(s)	57, 213
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	7 cut(s)	10, 84, 87, 106, 130, 154, 163
BlsI	GCNGC	7 cut(s)	11, 85, 88, 107, 131, 155, 164
Bme1390I	CCNGG	2 cut(s)	57, 213
BmiI	GGNNCC	2 cut(s)	69, 172
BmrFI	CCNGG	2 cut(s)	57, 213
BmrI	ACTGGG	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	13
BpmI	CTGGAG	2 cut(s)	118, 195
Bpu10I	CCTNAGC	1 cut(s)	188
BsaHI	GRCGYC	3 cut(s)	32, 60, 171
BsaJI	CCNNGG	2 cut(s)	42, 55
BsaWI	WCCGGW	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	19
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	57, 213
BseDI	CCNNGG	2 cut(s)	42, 55
BseGI	GGATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	60, 138
BseXI	GCAGC	2 cut(s)	70, 141
Bsh1236I	CGCG	2 cut(s)	9, 75
BshFI	GGCC	2 cut(s)	47, 216
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	141, 174
BslFI	GGGAC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	47, 216
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	222, 311
BspANI	GGCC	2 cut(s)	47, 216
BspCNI	CTCAG	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	9, 75
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	69, 172
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	42, 55
BssMI	GATC	2 cut(s)	222, 311
BssNI	GRCGYC	3 cut(s)	32, 60, 171
Bst2UI	CCWGG	2 cut(s)	57, 213
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	3 cut(s)	32, 60, 171
BstC8I	GCNNGC	2 cut(s)	7, 296
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	2 cut(s)	9, 75
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	105, 173
BstKTI	GATC	2 cut(s)	225, 314
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	222, 311
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 126, 135, 144, 153, 159, 162, 168, 264
BstNI	CCWGG	2 cut(s)	57, 213
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	55, 211
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	2 cut(s)	9, 75
BstV1I	GCAGC	2 cut(s)	70, 141
BsuRI	GGCC	2 cut(s)	47, 216
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	7, 296
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	2 cut(s)	105, 173
CseI	GACGC	2 cut(s)	49, 215
CviAII	CATG	4 cut(s)	148, 184, 247, 284
DdeI	CTNAG	1 cut(s)	188
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	2 cut(s)	224, 313
DpnII	GATC	2 cut(s)	222, 311
EciI	GGCGGA	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	55, 211
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	151, 187, 250, 287
FaiI	YATR	4 cut(s)	149, 185, 248, 285
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	147, 183, 246, 283
FauI	CCCGC	1 cut(s)	149
Fnu4HI	GCNGC	7 cut(s)	10, 84, 87, 106, 130, 154, 163
Fsp4HI	GCNGC	7 cut(s)	10, 84, 87, 106, 130, 154, 163
GlaI	GCGC	2 cut(s)	104, 172
GluI	GCNGC	7 cut(s)	10, 84, 87, 106, 130, 154, 163
GsuI	CTGGAG	2 cut(s)	118, 195
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	47, 216
HapII	CCGG	2 cut(s)	141, 174
HgaI	GACGC	2 cut(s)	49, 215
HhaI	GCGC	2 cut(s)	105, 173
Hin1I	GRCGYC	3 cut(s)	32, 60, 171
Hin1II	CATG	4 cut(s)	151, 187, 250, 287
Hin6I	GCGC	2 cut(s)	103, 171
HinP1I	GCGC	2 cut(s)	103, 171
HpaII	CCGG	2 cut(s)	141, 174
HphI	GGTGA	2 cut(s)	217, 265
Hpy188III	TCNNGA	2 cut(s)	141, 247
Hpy99I	CGWCG	6 cut(s)	34, 65, 114, 206, 209, 239
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 126, 135, 144, 153, 159, 162, 168, 264
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	3 cut(s)	32, 60, 171
Hsp92II	CATG	4 cut(s)	151, 187, 250, 287
HspAI	GCGC	2 cut(s)	103, 171
KasI	GGCGCC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	222, 311
LmnI	GCTCC	5 cut(s)	73, 137, 143, 214, 323
Lsp1109I	GCAGC	2 cut(s)	70, 141
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	224, 313
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	222, 311
MboII	GAAGA	2 cut(s)	30, 232
MhlI	GDGCHC	1 cut(s)	243
Mly113I	GGCGCC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	58, 81, 116, 119, 137, 263, 290, 314
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	328
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	83, 95
MspI	CCGG	2 cut(s)	141, 174
MspR9I	CCNGG	2 cut(s)	57, 213
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	57, 213
MvnI	CGCG	2 cut(s)	9, 75
MwoI	GCNNNNNNNGC	9 cut(s)	92, 126, 135, 144, 153, 159, 162, 168, 264
NarI	GGCGCC	1 cut(s)	171
NdeII	GATC	2 cut(s)	222, 311
NlaIII	CATG	4 cut(s)	151, 187, 250, 287
NlaIV	GGNNCC	2 cut(s)	69, 172
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	216
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	7 cut(s)	11, 85, 88, 107, 131, 155, 164
PluTI	GGCGCC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	55, 211
PspGI	CCWGG	2 cut(s)	55, 211
PspN4I	GGNNCC	2 cut(s)	69, 172
PvuII	CAGCTG	2 cut(s)	83, 95
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	7 cut(s)	10, 84, 87, 106, 130, 154, 163
Sau3AI	GATC	2 cut(s)	222, 311
ScrFI	CCNGG	2 cut(s)	57, 213
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	9 cut(s)	35, 85, 97, 134, 140, 194, 300, 306, 328
SfcI	CTRYAG	1 cut(s)	315
SfoI	GGCGCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	216
SspDI	GGCGCC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	55, 211
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	35
TauI	GCSGC	5 cut(s)	12, 89, 108, 156, 165
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	83, 129
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	187
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.