Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

21191998 .. 21192330

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGCAACGTCGTCTTCCACGACCTCACACCCCGGCGTCATAGCTCCTCGTGGTTCAGCTGCTGCCACAGCTGGAATGCACAGCCGTCGTATCGGTGGAGGCGACAACTCCAGCTCTAGAGGCATGGGAGGTAGCGGCGGTGGCTCTGGTGCCGGAAACAACATACTCAAGTTCTACACCGACGACGCTCCTGGCTTGAATATCTCCCCCACCGTCATGCTCGTCATGAGCCTATGCTTCATCGGCTTCGTCACTGGCCTCCACGTCTTCGGCAAGCTCTCCCTCCACCGATCCACCGGCGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

110

Amino Acids

10.87

Weight (kDa)

9.77

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	60 - 99	4.2e-14	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	3 cut(s)	159, 162, 324
AclWI	GGATC	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	68, 83, 95, 138, 301
AluI	AGCT	5 cut(s)	68, 83, 95, 138, 301
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	83, 86
AsuC2I	CCSGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	30, 283
BbvI	GCAGC	2 cut(s)	70, 73
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	3 cut(s)	84, 87, 160
BlsI	GCNGC	3 cut(s)	85, 88, 161
Bme1390I	CCNGG	2 cut(s)	57, 216
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	57, 216
BpiI	GAAGAC	2 cut(s)	30, 283
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	70, 73
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	57, 177, 321
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	314
BspACI	CCGC	3 cut(s)	159, 162, 324
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	1 cut(s)	314
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 144, 165, 267
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	55, 214
BstV1I	GCAGC	2 cut(s)	70, 73
BstV2I	GAAGAC	2 cut(s)	30, 283
BsuRI	GGCC	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	320
CseI	GACGC	2 cut(s)	49, 218
CviAII	CATG	3 cut(s)	148, 241, 250
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	3 cut(s)	151, 244, 253
FaiI	YATR	6 cut(s)	65, 149, 188, 242, 251, 259
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	3 cut(s)	147, 240, 249
Fnu4HI	GCNGC	3 cut(s)	84, 87, 160
Fsp4HI	GCNGC	3 cut(s)	84, 87, 160
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	3 cut(s)	84, 87, 160
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	3 cut(s)	57, 177, 321
HgaI	GACGC	2 cut(s)	49, 218
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	151, 244, 253
HpaII	CCGG	3 cut(s)	57, 177, 321
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	4 cut(s)	37, 114, 209, 212
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 144, 165, 267
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	151, 244, 253
Kzo9I	GATC	1 cut(s)	314
LmnI	GCTCC	2 cut(s)	73, 217
LpnPI	CCDG	8 cut(s)	70, 81, 148, 156, 190, 201, 228, 264
Lsp1109I	GCAGC	2 cut(s)	70, 73
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	2 cut(s)	30, 283
MnlI	CCTC	7 cut(s)	58, 81, 116, 137, 146, 293, 317
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	83, 95
MspI	CCGG	3 cut(s)	57, 177, 321
MspR9I	CCNGG	2 cut(s)	57, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	92, 144, 165, 267
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	3 cut(s)	151, 244, 253
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 123
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	85, 88, 161
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	86
PvuII	CAGCTG	2 cut(s)	83, 95
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	3 cut(s)	84, 87, 160
Sau3AI	GATC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	57, 216
SetI	ASST	9 cut(s)	35, 50, 70, 85, 97, 140, 157, 291, 303
SgrAI	CRCCGGYG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	6, 191
SmoI	CTYRAG	2 cut(s)	6, 191
SsiI	CCGC	3 cut(s)	159, 162, 324
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	55, 214
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	35, 291
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	83, 86
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	283
XbaI	TCTAGA	1 cut(s)	140
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.