Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

35326434 .. 35326703

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTCCTCGTGGTTCAGCTGTTGCCACAGCTGGAATGCGCAGCAGTCGTATCGGTGGAGGCGGCAGCTCCATCTCCGGAGGCATAGGCGGCAGCTGCGATGGCTCTAGTGCCGAAAACAACATACTCAGGTTCTACACCAACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCAATCCACTGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

89

Amino Acids

8.94

Weight (kDa)

9.3

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	40 - 78	2.9e-15	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	3 cut(s)	63, 90, 261
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	6 cut(s)	20, 32, 69, 96, 238, 266
AluI	AGCT	6 cut(s)	20, 32, 69, 96, 238, 266
Aor13HI	TCCGGA	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	42, 66, 93, 96
AspLEI	GCGC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	4 cut(s)	54, 78, 83, 105
BccI	CCATC	2 cut(s)	80, 95
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	6 cut(s)	43, 64, 67, 91, 94, 97
BlsI	GCNGC	6 cut(s)	44, 65, 68, 92, 95, 98
Bme1390I	CCNGG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	262
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	54, 78, 83, 105
BsiSI	CCGG	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	3 cut(s)	63, 90, 261
BspCNI	CTCAG	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 96, 102, 204
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	54, 78, 83, 105
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 255
Cac8I	GCNNGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	42
CseI	GACGC	1 cut(s)	155
CviAII	CATG	2 cut(s)	178, 187
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	181, 190
FaiI	YATR	4 cut(s)	86, 125, 179, 188
FatI	CATG	2 cut(s)	177, 186
Fnu4HI	GCNGC	6 cut(s)	43, 64, 67, 91, 94, 97
Fsp4HI	GCNGC	6 cut(s)	43, 64, 67, 91, 94, 97
FspBI	CTAG	1 cut(s)	108
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	6 cut(s)	43, 64, 67, 91, 94, 97
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	181, 190
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	78, 187
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 96, 102, 204
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	181, 190
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	4 cut(s)	10, 74, 154, 263
LpnPI	CCDG	6 cut(s)	18, 91, 115, 138, 165, 243
Lsp1109I	GCAGC	4 cut(s)	54, 78, 83, 105
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	172, 220
MflI	RGATCY	1 cut(s)	162
MnlI	CCTC	6 cut(s)	18, 53, 74, 203, 230, 254
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	20, 32, 96
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	90, 96, 102, 204
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	181, 190
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	41
PagI	TCATGA	1 cut(s)	186
PctI	GAATGC	1 cut(s)	42
PkrI	GCNGC	6 cut(s)	44, 65, 68, 92, 95, 98
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	3 cut(s)	20, 32, 96
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	268
SatI	GCNGC	6 cut(s)	43, 64, 67, 91, 94, 97
Sau3AI	GATC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	9 cut(s)	22, 34, 71, 98, 134, 228, 240, 246, 268
SmiMI	CAYNNNNRTG	1 cut(s)	176
SsiI	CCGC	3 cut(s)	63, 90, 261
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	228
TauI	GCSGC	2 cut(s)	66, 93
Tru1I	TTAA	1 cut(s)	268
Tru9I	TTAA	1 cut(s)	268
TscAI	CASTG	2 cut(s)	220, 262
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	4 cut(s)	42, 66, 93, 96
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	220, 262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.