Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

31492068 .. 31492391

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49196

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATGACATATCTATTCGGCACATTCTTCTTCACGACCTCACGCCCCGGCGTCATGGCTCCTCGTGGTTCAGCTGCTGCCACAGTTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCAGAGGCATGGGAGGTAGCGGCGGTGGCTCTGGTGCCAGAAACAACATACTTAGGATCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTTGTCATGAGCTTATGCTTCATCGGATTCGTCACTACCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

107

Amino Acids

11.13

Weight (kDa)

11.5

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	58 - 96	1.3e-14	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	4 cut(s)	117, 150, 153, 315
AclWI	GGATC	2 cut(s)	194, 300
AcyI	GRCGYC	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	214
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	5 cut(s)	74, 129, 246, 292, 320
AluI	AGCT	5 cut(s)	74, 129, 246, 292, 320
AlwI	GGATC	2 cut(s)	194, 300
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	74, 77, 96
AspLEI	GCGC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	61, 64, 108
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	48
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	5 cut(s)	75, 78, 97, 118, 151
BlsI	GCNGC	5 cut(s)	76, 79, 98, 119, 152
Bme1390I	CCNGG	2 cut(s)	48, 207
BmgBI	CACGTC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	60, 166
BmrFI	CCNGG	2 cut(s)	48, 207
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	2 cut(s)	109, 115
BpuMI	CCSGG	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	61, 64, 108
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	48, 312
BsmI	GAATGC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	186, 216, 305
BspACI	CCGC	4 cut(s)	117, 150, 153, 315
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	60, 166
BspPI	GGATC	2 cut(s)	194, 300
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	186, 216, 305
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	85, 229
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	3 cut(s)	189, 219, 308
BstMBI	GATC	3 cut(s)	186, 216, 305
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 135, 156
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	46, 205
BstV1I	GCAGC	3 cut(s)	61, 64, 108
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	2 cut(s)	186, 216
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	2 cut(s)	186, 216
BtrI	CACGTC	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	311
CseI	GACGC	2 cut(s)	40, 209
CviAII	CATG	4 cut(s)	55, 139, 232, 241
CviJI	RGCY	9 cut(s)	59, 74, 99, 129, 159, 210, 246, 292, 320
CviKI_1	RGCY	9 cut(s)	59, 74, 99, 129, 159, 210, 246, 292, 320
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	3 cut(s)	188, 218, 307
DpnII	GATC	3 cut(s)	186, 216, 305
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	4 cut(s)	58, 142, 235, 244
FaiI	YATR	7 cut(s)	10, 56, 140, 179, 233, 242, 250
FatI	CATG	4 cut(s)	54, 138, 231, 240
Fnu4HI	GCNGC	5 cut(s)	75, 78, 97, 118, 151
Fsp4HI	GCNGC	5 cut(s)	75, 78, 97, 118, 151
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	5 cut(s)	75, 78, 97, 118, 151
GsuI	CTGGAG	2 cut(s)	109, 115
HapII	CCGG	2 cut(s)	48, 312
HgaI	GACGC	2 cut(s)	40, 209
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	58, 142, 235, 244
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	2 cut(s)	48, 312
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	34, 132, 241
Hpy99I	CGWCG	3 cut(s)	105, 200, 203
HpyCH4III	ACNGT	2 cut(s)	85, 229
HpyCH4IV	ACGT	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 135, 156
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	58, 142, 235, 244
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	186, 216, 305
LmnI	GCTCC	4 cut(s)	64, 134, 208, 317
LpnPI	CCDG	7 cut(s)	61, 139, 145, 147, 181, 192, 219
Lsp1109I	GCAGC	3 cut(s)	61, 64, 108
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	188, 218, 307
MboI	GATC	3 cut(s)	186, 216, 305
MboII	GAAGA	4 cut(s)	19, 22, 226, 274
MflI	RGATCY	2 cut(s)	186, 216
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	7 cut(s)	49, 72, 107, 128, 137, 284, 308
MseI	TTAA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	48, 312
MspR9I	CCNGG	2 cut(s)	48, 207
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	126, 135, 156
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	186, 216, 305
NlaIII	CATG	4 cut(s)	58, 142, 235, 244
NlaIV	GGNNCC	2 cut(s)	60, 166
NmuCI	GTSAC	1 cut(s)	265
NsbI	TGCGCA	1 cut(s)	95
PagI	TCATGA	1 cut(s)	240
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	5 cut(s)	76, 79, 98, 119, 152
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	60, 166
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	186, 216
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	5 cut(s)	75, 78, 97, 118, 151
Sau3AI	GATC	3 cut(s)	186, 216, 305
ScrFI	CCNGG	2 cut(s)	48, 207
SetI	ASST	9 cut(s)	41, 76, 131, 148, 248, 282, 294, 300, 322
SgrAI	CRCCGGYG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	230
SsiI	CCGC	4 cut(s)	117, 150, 153, 315
StyD4I	CCNGG	2 cut(s)	46, 205
TaaI	ACNGT	2 cut(s)	85, 229
TaiI	ACGT	1 cut(s)	282
TauI	GCSGC	2 cut(s)	120, 153
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	3 cut(s)	74, 77, 96
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.