Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

12587057 .. 12587380

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTCAAGGCTCATCTCAGTTCCAAGCGACGTTGTCTTCCACGACCTCACGCCCTGGCGTCATGGCTCTTCATGGTTCAGCTGCTGCCACAGCTGGAATGCGCAGCCATCGTATTGGTGGAGGCGGCAACTCCAGCTCCGGAGGCATGGGCGGCAGCGGCAGTGGCTCTGGTGCCAAAAATAACATACTCAGCTTCTACACCGACGATGCTCCTGGCTTGAAGATCTCCCCCATCGTCATGCTCGTCATGAGCCTCTGCTTCATCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCAATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

107

Amino Acids

10.64

Weight (kDa)

9.86

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	61 - 91	3.1e-10	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	4 cut(s)	126, 153, 159, 315
AcyI	GRCGYC	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	55, 214
AluBI	AGCT	6 cut(s)	83, 95, 138, 195, 292, 320
AluI	AGCT	6 cut(s)	83, 95, 138, 195, 292, 320
AlwNI	CAGNNNCTG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	140
ApeKI	GCWGC	4 cut(s)	83, 86, 105, 156
AspLEI	GCGC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	30, 274
BbvI	GCAGC	4 cut(s)	70, 73, 117, 168
BccI	CCATC	2 cut(s)	117, 242
BciT130I	CCWGG	2 cut(s)	57, 216
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	7 cut(s)	84, 87, 106, 127, 154, 157, 160
BlsI	GCNGC	7 cut(s)	85, 88, 107, 128, 155, 158, 161
Bme1390I	CCNGG	2 cut(s)	57, 216
BmgBI	CACGTC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	57, 216
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	2 cut(s)	30, 274
BpmI	CTGGAG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	57, 216
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	32, 205
BseXI	GCAGC	4 cut(s)	70, 73, 117, 168
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	141, 312
BsmI	GAATGC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	4 cut(s)	126, 153, 159, 315
BspCNI	CTCAG	2 cut(s)	31, 204
BspEI	TCCGGA	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	57, 216
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	18, 191
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 153, 159, 165
BstNI	CCWGG	2 cut(s)	57, 216
BstSCI	CCNGG	2 cut(s)	55, 214
BstV1I	GCAGC	4 cut(s)	70, 73, 117, 168
BstV2I	GAAGAC	2 cut(s)	30, 274
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	280
BtsI	GCAGTG	2 cut(s)	169, 267
BtsIMutI	CAGTG	2 cut(s)	169, 267
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	311
CseI	GACGC	1 cut(s)	49
CviAII	CATG	5 cut(s)	64, 74, 148, 241, 250
DdeI	CTNAG	2 cut(s)	18, 191
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	55, 214
FaeI	CATG	5 cut(s)	67, 77, 151, 244, 253
FaiI	YATR	6 cut(s)	65, 75, 149, 188, 242, 251
FatI	CATG	5 cut(s)	63, 73, 147, 240, 249
Fnu4HI	GCNGC	7 cut(s)	84, 87, 106, 127, 154, 157, 160
Fsp4HI	GCNGC	7 cut(s)	84, 87, 106, 127, 154, 157, 160
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	7 cut(s)	84, 87, 106, 127, 154, 157, 160
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	2 cut(s)	141, 312
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	67, 77, 151, 244, 253
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	141, 312
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	2 cut(s)	34, 209
HpyCH4IV	ACGT	2 cut(s)	32, 279
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 153, 159, 165
HpyF3I	CTNAG	2 cut(s)	18, 191
HpySE526I	ACGT	2 cut(s)	32, 279
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	67, 77, 151, 244, 253
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	225
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	3 cut(s)	143, 217, 317
LpnPI	CCDG	8 cut(s)	42, 69, 81, 148, 154, 156, 201, 228
Lsp1109I	GCAGC	4 cut(s)	70, 73, 117, 168
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	2 cut(s)	32, 279
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	4 cut(s)	30, 62, 235, 274
MflI	RGATCY	1 cut(s)	225
MnlI	CCTC	6 cut(s)	58, 116, 137, 266, 284, 308
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	3 cut(s)	83, 95, 159
MspI	CCGG	2 cut(s)	141, 312
MspR9I	CCNGG	2 cut(s)	57, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	57, 216
MwoI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 153, 159, 165
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	5 cut(s)	67, 77, 151, 244, 253
NlaIV	GGNNCC	1 cut(s)	175
NsbI	TGCGCA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	85, 88, 107, 128, 155, 158, 161
Psp6I	CCWGG	2 cut(s)	55, 214
PspGI	CCWGG	2 cut(s)	55, 214
PspN4I	GGNNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	83, 95
RseI	CAYNNNNRTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	7 cut(s)	84, 87, 106, 127, 154, 157, 160
Sau3AI	GATC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	57, 216
SfaNI	GCATC	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	4 cut(s)	126, 153, 159, 315
StyD4I	CCNGG	2 cut(s)	55, 214
TaiI	ACGT	2 cut(s)	35, 282
TauI	GCSGC	3 cut(s)	129, 156, 162
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TscAI	CASTG	2 cut(s)	169, 274
TseI	GCWGC	4 cut(s)	83, 86, 105, 156
TspDTI	ATGAA	2 cut(s)	62, 253
TspRI	CASTG	2 cut(s)	169, 274
Tth111I	GACNNNGTC	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.