Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

33504310 .. 33504642

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGTGACGTCGTCTTCCACGACCTCACGCCCCGGCGTCATGGCTCCTCGTGGTTCAGCTGCTGCCACAGTTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCAGAGGCATGGGCTGCAGCGGTGGTGGCTCTGGTGCCGGAAACAACATACTCAGGTTCTACACCGACGACACTCCAGGCTTGAAGATCTCCCCCACCGTCATGCTCATCATGAGCCTATGCTTCATTGGCTTCGTCACTACCCTCCACGTCTTTAGCAAGCTCTACCTCCACCGATCCACCATCGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

110

Amino Acids

11.29

Weight (kDa)

10.85

Isoelectric Point (pI)

65.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	60 - 98	3.9e-15	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	2 cut(s)	126, 159
AclWI	GGATC	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	4 cut(s)	83, 138, 301, 329
AluI	AGCT	4 cut(s)	83, 138, 301, 329
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	5 cut(s)	83, 86, 105, 153, 156
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	5 cut(s)	70, 73, 117, 140, 168
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	154
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	6 cut(s)	84, 87, 106, 127, 154, 157
BlsI	GCNGC	6 cut(s)	85, 88, 107, 128, 155, 158
Bme1390I	CCNGG	2 cut(s)	57, 216
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	69, 175
BmrFI	CCNGG	2 cut(s)	57, 216
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	3 cut(s)	118, 124, 198
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	32, 205
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	5 cut(s)	70, 73, 117, 140, 168
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	57, 177
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	225, 314
BspACI	CCGC	2 cut(s)	126, 159
BspCNI	CTCAG	2 cut(s)	31, 204
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	69, 175
BspMAI	CTGCAG	1 cut(s)	158
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	225, 314
BssNI	GRCGYC	2 cut(s)	32, 60
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	94, 238
BstACI	GRCGYC	2 cut(s)	32, 60
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	18, 191
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	228, 317
BstMBI	GATC	2 cut(s)	225, 314
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 144, 153, 165, 267
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	55, 214
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	5 cut(s)	70, 73, 117, 140, 168
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	1 cut(s)	49
CviAII	CATG	4 cut(s)	64, 148, 241, 250
DdeI	CTNAG	2 cut(s)	18, 191
DpnI	GATC	2 cut(s)	227, 316
DpnII	GATC	2 cut(s)	225, 314
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	4 cut(s)	67, 151, 244, 253
FaiI	YATR	6 cut(s)	65, 149, 188, 242, 251, 259
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	63, 147, 240, 249
Fnu4HI	GCNGC	6 cut(s)	84, 87, 106, 127, 154, 157
Fsp4HI	GCNGC	6 cut(s)	84, 87, 106, 127, 154, 157
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	6 cut(s)	84, 87, 106, 127, 154, 157
GsuI	CTGGAG	3 cut(s)	118, 124, 198
HapII	CCGG	2 cut(s)	57, 177
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	4 cut(s)	67, 151, 244, 253
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	327
HpaII	CCGG	2 cut(s)	57, 177
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	3 cut(s)	37, 114, 209
HpyCH4III	ACNGT	2 cut(s)	94, 238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 144, 153, 165, 267
HpyF3I	CTNAG	2 cut(s)	18, 191
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	4 cut(s)	67, 151, 244, 253
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	225, 314
LmnI	GCTCC	2 cut(s)	73, 143
LpnPI	CCDG	8 cut(s)	70, 148, 154, 156, 178, 190, 201, 228
Lsp1109I	GCAGC	5 cut(s)	70, 73, 117, 140, 168
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	2 cut(s)	28, 274
MalI	GATC	2 cut(s)	227, 316
MboI	GATC	2 cut(s)	225, 314
MboII	GAAGA	2 cut(s)	30, 235
MflI	RGATCY	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	58, 81, 116, 137, 293, 317
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	83, 159
MspI	CCGG	2 cut(s)	57, 177
MspR9I	CCNGG	2 cut(s)	57, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	5 cut(s)	135, 144, 153, 165, 267
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	225, 314
NlaIII	CATG	4 cut(s)	67, 151, 244, 253
NlaIV	GGNNCC	2 cut(s)	69, 175
NmuCI	GTSAC	2 cut(s)	28, 274
NsbI	TGCGCA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	6 cut(s)	85, 88, 107, 128, 155, 158
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	69, 175
PstI	CTGCAG	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	6 cut(s)	84, 87, 106, 127, 154, 157
Sau3AI	GATC	2 cut(s)	225, 314
ScrFI	CCNGG	2 cut(s)	57, 216
SetI	ASST	9 cut(s)	35, 50, 85, 140, 197, 291, 303, 309, 331
SfcI	CTRYAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	2 cut(s)	126, 159
StyD4I	CCNGG	2 cut(s)	55, 214
TaaI	ACNGT	2 cut(s)	94, 238
TaiI	ACGT	2 cut(s)	35, 291
TaqI	TCGA	1 cut(s)	324
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	28, 274
TseI	GCWGC	5 cut(s)	83, 86, 105, 153, 156
Tsp45I	GTSAC	2 cut(s)	28, 274
TspDTI	ATGAA	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	34
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.