Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

6840924 .. 6841781

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTCGAGGCACATCTCAGTCCCAAACGACGGCGTCCTCCTCCACCTCACGCCCCGGCGTAATGGCTCCCCGCGGCTCTGCCGCCGCTACGGCCGGAATGCGCCGCCGTCGCATAGGAGGCTCTACCAGCTCCGGCAGCGTCGGCGGAGGCGGAGGCGGGTCTGGTGCTGGCAACAACATGCTCAGGTTCTACACAGATGACGCTCCTGGATTGAAGATCACGCCGACTGTTGTTCTCGTCATGAGCCTTTGCTTCATCGGCTTCGTTACGGCTCTTCATGTGTTCGGCAAGCTCTATCTCCACCGATCCGGTGGTGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

109

Amino Acids

10.77

Weight (kDa)

11.72

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	8 cut(s)	73, 75, 84, 87, 106, 147, 153, 159
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	132, 295, 323
AluI	AGCT	3 cut(s)	132, 295, 323
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	150
BceAI	ACGGC	4 cut(s)	48, 93, 108, 288
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	76, 84, 87, 106, 139
BlsI	GCNGC	5 cut(s)	77, 85, 88, 107, 140
Bme1390I	CCNGG	2 cut(s)	57, 210
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	57, 210
Bpu10I	CCTNAGC	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	55, 73
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	55, 73
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	2 cut(s)	32, 199
BseRI	GAGGAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	57, 96, 135, 312
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	2 cut(s)	219, 308
BspACI	CCGC	8 cut(s)	73, 75, 84, 87, 106, 147, 153, 159
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	31, 198
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	55, 73
BssMI	GATC	2 cut(s)	219, 308
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	172, 293
BstDEI	CTNAG	2 cut(s)	18, 185
BstDSI	CCRYGG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	222, 311
BstMBI	GATC	2 cut(s)	219, 308
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 111, 120, 129, 138, 144, 261
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	55, 208
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	172, 293
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	105
Cfr42I	CCGCGG	1 cut(s)	76
CseI	GACGC	3 cut(s)	24, 130, 212
CviAII	CATG	3 cut(s)	181, 244, 281
DdeI	CTNAG	2 cut(s)	18, 185
DpnI	GATC	2 cut(s)	221, 310
DpnII	GATC	2 cut(s)	219, 308
EaeI	YGGCCR	1 cut(s)	93
EagI	CGGCCG	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	162, 168
EclXI	CGGCCG	1 cut(s)	93
Eco52I	CGGCCG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	184, 247, 284
FaiI	YATR	4 cut(s)	116, 182, 245, 282
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	3 cut(s)	180, 243, 280
FauI	CCCGC	2 cut(s)	80, 152
Fnu4HI	GCNGC	5 cut(s)	76, 84, 87, 106, 139
Fsp4HI	GCNGC	5 cut(s)	76, 84, 87, 106, 139
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	76, 84, 87, 106, 139
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	4 cut(s)	57, 96, 135, 312
HgaI	GACGC	3 cut(s)	24, 130, 212
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	184, 247, 284
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	4 cut(s)	57, 96, 135, 312
Hpy188III	TCNNGA	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	34, 114, 146
HpyCH4III	ACNGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 111, 120, 129, 138, 144, 261
HpyF3I	CTNAG	2 cut(s)	18, 185
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	184, 247, 284
HspAI	GCGC	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	219, 308
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	4 cut(s)	73, 137, 211, 320
LpnPI	CCDG	9 cut(s)	70, 109, 142, 148, 150, 156, 172, 195, 222
Lsp1109I	GCAGC	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	221, 310
MboI	GATC	2 cut(s)	219, 308
MboII	GAAGA	2 cut(s)	229, 269
MnlI	CCTC	6 cut(s)	49, 52, 58, 113, 143, 149
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	4 cut(s)	57, 96, 135, 312
MspR9I	CCNGG	2 cut(s)	57, 210
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	92, 111, 120, 129, 138, 144, 261
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	219, 308
NlaIII	CATG	3 cut(s)	184, 247, 284
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	77, 85, 88, 107, 140
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	34
SacII	CCGCGG	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	5 cut(s)	76, 84, 87, 106, 139
Sau3AI	GATC	2 cut(s)	219, 308
ScrFI	CCNGG	2 cut(s)	57, 210
SetI	ASST	5 cut(s)	50, 134, 191, 297, 325
Sfr274I	CTCGAG	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	8 cut(s)	73, 75, 84, 87, 106, 147, 153, 159
StyD4I	CCNGG	2 cut(s)	55, 208
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	7
TauI	GCSGC	4 cut(s)	78, 86, 89, 108
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	247, 269
Tth111I	GACNNNGTC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XhoI	CTCGAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.