Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

31052406 .. 31052726

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG155500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGCGACGTCGTCTTCCACGACCTCACACCTCGACGTCAAGGCTCCTCGTGGTTCAGTTGGAATGCGCAGCCGTAGTATAGGTGGAGGCGGCAACTCCAGCTCCGGAGGCATAGGCGGCAGCGGCAGTGGCTCTGGTGCCGAAAACAACATACTCAGGTTCTACACCAACGACGCTCCTAGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAACCTCTGCTTCATCGGCTTCGTCACTGCCATCCACGTCTTCGGCAAGCTCTACCTCTACCGATCCACCGACGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

106

Amino Acids

10.78

Weight (kDa)

9.74

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	57 - 95	2.1e-11	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	35, 63
Acc16I	TGCGCA	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	3 cut(s)	114, 141, 147
AclWI	GGATC	1 cut(s)	297
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	277
AluBI	AGCT	4 cut(s)	126, 207, 289, 317
AluI	AGCT	4 cut(s)	126, 207, 289, 317
AlwI	GGATC	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	93, 144
AspLEI	GCGC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	30, 271
BbvI	GCAGC	2 cut(s)	105, 156
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	204
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	5 cut(s)	94, 115, 142, 145, 148
BlsI	GCNGC	5 cut(s)	95, 116, 143, 146, 149
BmgBI	CACGTC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	69, 163
BpiI	GAAGAC	2 cut(s)	30, 271
BpmI	CTGGAG	1 cut(s)	106
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
BseAI	TCCGGA	1 cut(s)	128
BseGI	GGATG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	32, 193
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	105, 156
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	213, 302
BspACI	CCGC	3 cut(s)	114, 141, 147
BspCNI	CTCAG	2 cut(s)	31, 192
BspEI	TCCGGA	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	69, 163
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	161
BssMI	GATC	2 cut(s)	213, 302
BssNI	GRCGYC	2 cut(s)	32, 60
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	18, 179
BstF5I	GGATG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	2 cut(s)	216, 305
BstMBI	GATC	2 cut(s)	213, 302
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 132, 141, 147, 153, 255
BstV1I	GCAGC	2 cut(s)	105, 156
BstV2I	GAAGAC	2 cut(s)	30, 271
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	2 cut(s)	157, 264
BtsIMutI	CAGTG	2 cut(s)	157, 264
Cac8I	GCNNGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	93
CseI	GACGC	1 cut(s)	206
CviAII	CATG	2 cut(s)	229, 238
DdeI	CTNAG	2 cut(s)	18, 179
DpnI	GATC	2 cut(s)	215, 304
DpnII	GATC	2 cut(s)	213, 302
FaeI	CATG	2 cut(s)	232, 241
FaiI	YATR	5 cut(s)	104, 137, 176, 230, 239
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	2 cut(s)	228, 237
Fnu4HI	GCNGC	5 cut(s)	94, 115, 142, 145, 148
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	94, 115, 142, 145, 148
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	5 cut(s)	94, 115, 142, 145, 148
GsuI	CTGGAG	1 cut(s)	106
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	2 cut(s)	232, 241
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	129, 238
Hpy99I	CGWCG	5 cut(s)	34, 37, 62, 200, 314
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	3 cut(s)	32, 60, 276
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 132, 141, 147, 153, 255
HpyF3I	CTNAG	2 cut(s)	18, 179
HpySE526I	ACGT	3 cut(s)	32, 60, 276
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	2 cut(s)	232, 241
HspAI	GCGC	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	213, 302
LmnI	GCTCC	4 cut(s)	73, 131, 205, 314
LpnPI	CCDG	4 cut(s)	136, 142, 144, 166
Lsp1109I	GCAGC	2 cut(s)	105, 156
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	3 cut(s)	32, 60, 276
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	215, 304
MboI	GATC	2 cut(s)	213, 302
MboII	GAAGA	3 cut(s)	30, 223, 271
MflI	RGATCY	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	58, 65, 81, 104, 125, 254, 305
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	1 cut(s)	319
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	93
MwoI	GCNNNNNNNGC	6 cut(s)	123, 132, 141, 147, 153, 255
NdeII	GATC	2 cut(s)	213, 302
NlaIII	CATG	2 cut(s)	232, 241
NlaIV	GGNNCC	2 cut(s)	69, 163
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	92
PagI	TCATGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	93
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	95, 116, 143, 146, 149
PspN4I	GGNNCC	2 cut(s)	69, 163
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	5 cut(s)	94, 115, 142, 145, 148
Sau3AI	GATC	2 cut(s)	213, 302
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	3 cut(s)	114, 141, 147
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	3 cut(s)	35, 63, 279
TaqI	TCGA	1 cut(s)	57
TauI	GCSGC	3 cut(s)	117, 144, 150
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TscAI	CASTG	2 cut(s)	157, 271
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	93, 144
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	241, 254
TspRI	CASTG	2 cut(s)	157, 271
Tth111I	GACNNNGTC	1 cut(s)	34
XspI	CTAG	1 cut(s)	204
ZraI	GACGTC	2 cut(s)	33, 61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.