Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

7446242 .. 7446553

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGTGGGCCTGCTTCAGTCGATTCCTCACGCCCCGGCGTCATGGCTCCTCGTGGTTCAGCTGCTGCCACAGCTGGAAGGCCCAGCCATCGTATCGGTGGAGGCGGCAACTCCAGCTCGGGAGGCATGGGCTGCAGCAGTGGTGGCTGTGGTGCTGGAAATAACATACTCAGGTTCTACACCGACGACACTTCGGGCTTAAAGATCTCCCCCACCATCATGCTTGCCATGAGCCTCTGCTTCATCAGCTTCGTCACTGCCCTCCGCGTCTTCGGCAAGCTCTACCTCCACCAATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

104

Amino Acids

10.22

Weight (kDa)

9.74

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	53 - 92	4.2e-14	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	105, 265, 303
AcyI	GRCGYC	1 cut(s)	39
AluBI	AGCT	6 cut(s)	62, 74, 117, 249, 280, 308
AluI	AGCT	6 cut(s)	62, 74, 117, 249, 280, 308
AlwNI	CAGNNNCTG	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	8, 80
ApeKI	GCWGC	4 cut(s)	62, 65, 132, 135
AspS9I	GGNCC	2 cut(s)	8, 81
AsuC2I	CCSGG	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	118
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	4 cut(s)	49, 52, 119, 147
BccI	CCATC	2 cut(s)	96, 224
BcnI	CCSGG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	5 cut(s)	63, 66, 106, 133, 136
BlsI	GCNGC	5 cut(s)	64, 67, 107, 134, 137
Bme1390I	CCNGG	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	8, 81
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	4 cut(s)	49, 52, 119, 147
BseYI	CCCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	10, 82
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	36, 300
BsnI	GGCC	2 cut(s)	10, 82
BsoBI	CYCGRG	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	105, 265, 303
BspANI	GGCC	2 cut(s)	10, 82
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	12, 225, 278
BstDEI	CTNAG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 114, 123, 132, 144, 246, 273
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	49, 52, 119, 147
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	10, 82
BtsI	GCAGTG	2 cut(s)	145, 255
BtsIMutI	CAGTG	2 cut(s)	145, 255
Cac8I	GCNNGC	3 cut(s)	12, 225, 278
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	8, 81
CseI	GACGC	2 cut(s)	28, 256
CviAII	CATG	4 cut(s)	43, 127, 220, 229
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	118
FaeI	CATG	4 cut(s)	46, 130, 223, 232
FaiI	YATR	5 cut(s)	44, 128, 167, 221, 230
FatI	CATG	4 cut(s)	42, 126, 219, 228
Fnu4HI	GCNGC	5 cut(s)	63, 66, 106, 133, 136
Fsp4HI	GCNGC	5 cut(s)	63, 66, 106, 133, 136
GluI	GCNGC	5 cut(s)	63, 66, 106, 133, 136
GsaI	CCCAGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	10, 82
HapII	CCGG	2 cut(s)	36, 300
HgaI	GACGC	2 cut(s)	28, 256
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	46, 130, 223, 232
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	36, 300
Hpy188III	TCNNGA	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 114, 123, 132, 144, 246, 273
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	46, 130, 223, 232
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	52, 305
LpnPI	CCDG	7 cut(s)	24, 49, 60, 97, 127, 141, 157
Lsp1109I	GCAGC	4 cut(s)	49, 52, 119, 147
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	204
MnlI	CCTC	7 cut(s)	37, 60, 95, 116, 245, 272, 296
MseI	TTAA	2 cut(s)	200, 310
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	62, 74
MspI	CCGG	2 cut(s)	36, 300
MspR9I	CCNGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	7 cut(s)	71, 114, 123, 132, 144, 246, 273
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	4 cut(s)	46, 130, 223, 232
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	5 cut(s)	64, 67, 107, 134, 137
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	8, 81
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	2 cut(s)	62, 74
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	200, 310
SatI	GCNGC	5 cut(s)	63, 66, 106, 133, 136
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	8, 81
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	8 cut(s)	64, 76, 119, 176, 251, 282, 288, 310
SfcI	CTRYAG	1 cut(s)	133
SgrAI	CRCCGGYG	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	218
SsiI	CCGC	3 cut(s)	105, 265, 303
StyD4I	CCNGG	1 cut(s)	34
TaqI	TCGA	1 cut(s)	21
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	200, 310
Tru9I	TTAA	2 cut(s)	200, 310
TscAI	CASTG	2 cut(s)	145, 262
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	62, 65, 132, 135
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	145, 262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.