Rh3DG271100

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001066
Physical Location & Seq
Forward (+)
27162981 .. 27163241
261 bp
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UTR
Exon/CDS
Intron
Rh3DG271100.1

Sequence Viewer

Length: 261 bp
ATGGCTCCTCGTGGTTCAGGTACTGCCACAGCTGGAATGCGCAGCCGTCGTATTGGTGGAGGTGGCAACTCTAGCTCCGGAGGAAGCGGCGGTGGCTCTAGTGCCGGAAACAACATACTCAGGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACTGTCATGCTCGTCATGAGCCTCAGCTTCATCAGCTTCATCACTGCCCTCCACGTCTTCGACAAGCTCTACCTCCACCGATCCATCGGCGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

86

Amino Acids

8.72

Weight (kDa)

10.9

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 36 - 74 5.9e-15 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 3 cut(s) 87, 90, 252
AclWI GGATC 1 cut(s) 237
AfaI GTAC 1 cut(s) 22
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 6 cut(s) 32, 75, 189, 198, 229, 257
AluI AGCT 6 cut(s) 32, 75, 189, 198, 229, 257
AlwI GGATC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 42
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 144
BfaI CTAG 2 cut(s) 72, 99
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 43, 88
BlsI GCNGC 2 cut(s) 44, 89
Bme1390I CCNGG 1 cut(s) 144
BmgBI CACGTC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 185
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 133, 199
BseXI GCAGC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 78, 105
BsmI GAATGC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 153, 242
BspACI CCGC 3 cut(s) 87, 90, 252
BspCNI CTCAG 2 cut(s) 132, 198
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 237
BssMI GATC 2 cut(s) 153, 242
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 119, 185
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 156, 245
BstMBI GATC 2 cut(s) 153, 242
BstMWI GCNNNNNNNGC 3 cut(s) 72, 93, 195
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtrI CACGTC 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 162, 204
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 177
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 21
CviAII CATG 2 cut(s) 169, 178
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 119, 185
DpnI GATC 2 cut(s) 155, 244
DpnII GATC 2 cut(s) 153, 242
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 172, 181
FaiI YATR 3 cut(s) 116, 170, 179
FatI CATG 2 cut(s) 168, 177
Fnu4HI GCNGC 2 cut(s) 43, 88
Fsp4HI GCNGC 2 cut(s) 43, 88
FspBI CTAG 2 cut(s) 72, 99
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 43, 88
HapII CCGG 2 cut(s) 78, 105
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 172, 181
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HpaII CCGG 2 cut(s) 78, 105
Hpy188III TCNNGA 2 cut(s) 78, 178
Hpy99I CGWCG 3 cut(s) 51, 137, 140
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 93, 195
HpyF3I CTNAG 2 cut(s) 119, 185
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 2 cut(s) 172, 181
HspAI GCGC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 2 cut(s) 153, 242
LmnI GCTCC 4 cut(s) 10, 80, 145, 254
LpnPI CCDG 7 cut(s) 3, 18, 91, 106, 118, 129, 156
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 2 cut(s) 72, 99
MaeII ACGT 1 cut(s) 216
MalI GATC 2 cut(s) 155, 244
MboI GATC 2 cut(s) 153, 242
MboII GAAGA 2 cut(s) 163, 211
MflI RGATCY 1 cut(s) 153
MnlI CCTC 6 cut(s) 18, 53, 74, 194, 221, 245
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 259
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 78, 105
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 72, 93, 195
NdeII GATC 2 cut(s) 153, 242
NlaIII CATG 2 cut(s) 172, 181
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 177
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 44, 89
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 259
SatI GCNGC 2 cut(s) 43, 88
Sau3AI GATC 2 cut(s) 153, 242
ScrFI CCNGG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 167
SsiI CCGC 3 cut(s) 87, 90, 252
SspMI CTAG 2 cut(s) 72, 99
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 222
TauI GCSGC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TscAI CASTG 2 cut(s) 169, 211
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 181, 190
TspRI CASTG 2 cut(s) 169, 211
XspI CTAG 2 cut(s) 72, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.