Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

10068553 .. 10070479

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1115300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTCGAGGTTCATCCCAGTCCCAAGCGTCGTCGTCCTCTGCGACTGCGCGCCCCGGCGTCATGGCTCCGCGGGGCTCGGCCGCCGCGACTGCTGGAATGCGTCGCCGTCGTGTCGGAGGCTCCACCGGCTCCGGAAGCATCGGCGGAGGAGGAGGCGGATCAGGTGCCGGAAACAACATGCTGAGGTTCTACACGGACGACGCTCCTGGCTTGAAGATCACCCCGACTGTTGTCCTCGTCATGAGCCTCTGCTTCATAGGCTTCGTCACGGCTCTTCATGTGTTCGGCAAGCTGTACCTCCACCGATCTGGTGGCGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

109

Amino Acids

10.66

Weight (kDa)

11.72

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	58 - 97	1.9e-18	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	3 cut(s)	52, 73, 89
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	7 cut(s)	71, 73, 84, 87, 147, 159, 318
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	295, 323
AluI	AGCT	2 cut(s)	295, 323
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	52, 54
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	93, 288
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	2 cut(s)	57, 210
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	4 cut(s)	69, 124, 133, 169
BmrFI	CCNGG	2 cut(s)	57, 210
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	13
BoxI	GACNNNNGTC	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	55, 71
BsaWI	WCCGGW	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	19
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	55, 71
BseGI	GGATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	19
BsePI	GCGCGC	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	165, 168
BseX3I	CGGCCG	1 cut(s)	81
Bsh1236I	CGCG	3 cut(s)	52, 73, 89
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	57, 129, 135, 171
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	161, 219, 308
BspACI	CCGC	7 cut(s)	71, 73, 84, 87, 147, 159, 318
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	177
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	3 cut(s)	52, 73, 89
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	4 cut(s)	69, 124, 133, 169
BspPI	GGATC	1 cut(s)	169
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	55, 71
BssHII	GCGCGC	1 cut(s)	50
BssMI	GATC	3 cut(s)	161, 219, 308
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	52, 293
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	3 cut(s)	52, 73, 89
BstHHI	GCGC	2 cut(s)	52, 54
BstKTI	GATC	3 cut(s)	164, 222, 311
BstMBI	GATC	3 cut(s)	161, 219, 308
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 129, 138, 261
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	55, 208
BstUI	CGCG	3 cut(s)	52, 73, 89
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	52, 293
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	2 cut(s)	52, 54
Cfr10I	RCCGGY	1 cut(s)	128
Cfr42I	CCGCGG	1 cut(s)	74
CseI	GACGC	4 cut(s)	18, 49, 92, 212
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	64, 181, 244, 281
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	3 cut(s)	163, 221, 310
DpnII	GATC	3 cut(s)	161, 219, 308
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	162, 174
EclXI	CGGCCG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	4 cut(s)	67, 184, 247, 284
FaiI	YATR	5 cut(s)	65, 182, 245, 260, 282
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	63, 180, 243, 280
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	84, 87
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	84, 87
GlaI	GCGC	2 cut(s)	51, 53
GluI	GCNGC	2 cut(s)	84, 87
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	4 cut(s)	57, 129, 135, 171
HgaI	GACGC	4 cut(s)	18, 49, 92, 212
HhaI	GCGC	2 cut(s)	52, 54
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	67, 184, 247, 284
Hin6I	GCGC	2 cut(s)	50, 52
HinP1I	GCGC	2 cut(s)	50, 52
HpaII	CCGG	4 cut(s)	57, 129, 135, 171
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	135, 244
Hpy99I	CGWCG	5 cut(s)	34, 37, 108, 114, 206
HpyCH4III	ACNGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 129, 138, 261
HpyF3I	CTNAG	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	67, 184, 247, 284
HspAI	GCGC	2 cut(s)	50, 52
Kpn2I	TCCGGA	1 cut(s)	134
KspI	CCGCGG	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	161, 219, 308
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	5 cut(s)	73, 128, 137, 211, 320
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	163, 221, 310
MboI	GATC	3 cut(s)	161, 219, 308
MboII	GAAGA	2 cut(s)	229, 269
MhlI	GDGCHC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	9 cut(s)	49, 113, 143, 146, 149, 180, 248, 260, 311
MroI	TCCGGA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	4 cut(s)	57, 129, 135, 171
MspR9I	CCNGG	2 cut(s)	57, 210
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	3 cut(s)	52, 73, 89
MwoI	GCNNNNNNNGC	4 cut(s)	92, 129, 138, 261
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	161, 219, 308
NlaIII	CATG	4 cut(s)	67, 184, 247, 284
NlaIV	GGNNCC	4 cut(s)	69, 124, 133, 169
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	243
PauI	GCGCGC	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 86
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	85, 88
PshAI	GACNNNNGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	69, 124, 133, 169
PspXI	VCTCGAGB	1 cut(s)	6
PteI	GCGCGC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacII	CCGCGG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	3 cut(s)	161, 219, 308
ScrFI	CCNGG	2 cut(s)	57, 210
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	13, 169, 191, 297, 303, 325
SfaNI	GCATC	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	74
SgrBI	CCGCGG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	7 cut(s)	71, 73, 84, 87, 147, 159, 318
StyD4I	CCNGG	2 cut(s)	55, 208
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	7
TauI	GCSGC	2 cut(s)	86, 89
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	247, 269
TspGWI	ACGGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XhoI	CTCGAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.