Rh2DG303900

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001066
Physical Location & Seq
Forward (+)
36518750 .. 36519019
270 bp
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UTR
Exon/CDS
Intron
Rh2DG303900.1

Sequence Viewer

Length: 270 bp
ATGGCTCCTCGTGGTTCAGCTGCTGCCACAGTTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCAGAGGCATGGGAGGTAGCGGCGGTGGCTCTGGTGCCAGAAACAACATACTTAGGATCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTTGTCATGAGCTTATGCTTCATCGGATTCGTCACTACCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

89

Amino Acids

9.04

Weight (kDa)

11.55

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 40 - 78 8.4e-15 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 110
AciI CCGC 4 cut(s) 63, 96, 99, 261
AclWI GGATC 2 cut(s) 140, 246
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 5 cut(s) 20, 75, 192, 238, 266
AluI AGCT 5 cut(s) 20, 75, 192, 238, 266
AlwI GGATC 2 cut(s) 140, 246
AlwNI CAGNNNCTG 1 cut(s) 23
ApeKI GCWGC 3 cut(s) 20, 23, 42
AspLEI GCGC 1 cut(s) 42
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 7, 10, 54
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 153
BglII AGATCT 1 cut(s) 162
BisI GCNGC 5 cut(s) 21, 24, 43, 64, 97
BlsI GCNGC 5 cut(s) 22, 25, 44, 65, 98
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 6, 112
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 2 cut(s) 55, 61
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse118I RCCGGY 1 cut(s) 257
BseBI CCWGG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 7, 10, 54
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 258
BsmI GAATGC 1 cut(s) 42
Bsp143I GATC 3 cut(s) 132, 162, 251
BspACI CCGC 4 cut(s) 63, 96, 99, 261
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 6, 112
BspPI GGATC 2 cut(s) 140, 246
BspT107I GGYRCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 3 cut(s) 132, 162, 251
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 31, 175
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 135, 165, 254
BstMBI GATC 3 cut(s) 132, 162, 251
BstMWI GCNNNNNNNGC 3 cut(s) 72, 81, 102
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 7, 10, 54
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 132, 162
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 2 cut(s) 132, 162
BtrI CACGTC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 1 cut(s) 155
CviAII CATG 3 cut(s) 85, 178, 187
CviJI RGCY 9 cut(s) 5, 20, 45, 75, 105, 156, 192, 238, 266
CviKI_1 RGCY 9 cut(s) 5, 20, 45, 75, 105, 156, 192, 238, 266
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 134, 164, 253
DpnII GATC 3 cut(s) 132, 162, 251
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 88, 181, 190
FaiI YATR 5 cut(s) 86, 125, 179, 188, 196
FatI CATG 3 cut(s) 84, 177, 186
Fnu4HI GCNGC 5 cut(s) 21, 24, 43, 64, 97
Fsp4HI GCNGC 5 cut(s) 21, 24, 43, 64, 97
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 5 cut(s) 21, 24, 43, 64, 97
GsuI CTGGAG 2 cut(s) 55, 61
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 42
Hin1II CATG 3 cut(s) 88, 181, 190
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 78, 187
Hpy99I CGWCG 3 cut(s) 51, 146, 149
HpyCH4III ACNGT 2 cut(s) 31, 175
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 81, 102
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 88, 181, 190
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 3 cut(s) 132, 162, 251
LmnI GCTCC 4 cut(s) 10, 80, 154, 263
LpnPI CCDG 6 cut(s) 85, 91, 93, 127, 138, 165
Lsp1109I GCAGC 3 cut(s) 7, 10, 54
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 134, 164, 253
MboI GATC 3 cut(s) 132, 162, 251
MboII GAAGA 2 cut(s) 172, 220
MflI RGATCY 2 cut(s) 132, 162
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 18, 53, 74, 83, 230, 254
MseI TTAA 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 72, 81, 102
NdeII GATC 3 cut(s) 132, 162, 251
NlaIII CATG 3 cut(s) 88, 181, 190
NlaIV GGNNCC 2 cut(s) 6, 112
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 5 cut(s) 22, 25, 44, 65, 98
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 6, 112
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 132, 162
PvuII CAGCTG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 5 cut(s) 21, 24, 43, 64, 97
Sau3AI GATC 3 cut(s) 132, 162, 251
ScrFI CCNGG 1 cut(s) 153
SetI ASST 8 cut(s) 22, 77, 94, 194, 228, 240, 246, 268
SgrAI CRCCGGYG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 176
SsiI CCGC 4 cut(s) 63, 96, 99, 261
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 31, 175
TaiI ACGT 1 cut(s) 228
TauI GCSGC 2 cut(s) 66, 99
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 3 cut(s) 20, 23, 42
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.