pycom07g25430

posttranslational protein targeting to membrane, translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0001066
Physical Location & Seq
Forward (+)
25743992 .. 25744498
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25430.2

Sequence Viewer

Length: 399 bp
ATGGCTCCGCGGGGCTCGCCCGCTGCGACGGCTGGAATGCGTCGCCGTCGTGTCGGAGGCTCCACCGGCTCCGGAAGCATCGGCGGAGGAGGAGGCAGATCAGGTGCCGGAAACAACATGCTGAGGTTCTACACGGACGACGCTCCTGGCTTGAAGATCACCCCGACTGTTGTCCTCGTCATGAGCCTCTGCTTCATAGGCTTCGTCACGGCTCTTCATGTGTTTGGCAAGCTGTACCTCCACCGATCTGGTGGCGGATTGATGTTGTTAGGGTTTCAATTTTGTTTAAAGTTTGGATCTGTTGACTCTTGGATTGTGTTTGGATCAAAATCGAGTAATATTTATCCCTTCGTTATTTTGCTCTCTAATGTGGAAGTGTTACATAATTACATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0003674 GO:0005085 GO:0005086 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005784 GO:0005789 GO:0005791 GO:0005829 GO:0006508 GO:0006511 GO:0006605 GO:0006606 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0008320 GO:0008565 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010506 GO:0010507 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0017038 GO:0019222 GO:0019538 GO:0019838 GO:0019899 GO:0019941 GO:0022804 GO:0022857 GO:0022884 GO:0030163 GO:0030433 GO:0030867 GO:0030970 GO:0031090 GO:0031204 GO:0031205 GO:0031224 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031984 GO:0032527 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042562 GO:0042886 GO:0042887 GO:0043021 GO:0043022 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046907 GO:0048408 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0065002 GO:0065007 GO:0065009 GO:0070727 GO:0070972 GO:0071256 GO:0071261 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098772 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904680
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

133

Amino Acids

13.96

Weight (kDa)

10.02

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccII CGCG 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 5 cut(s) 8, 10, 21, 84, 255
AclWI GGATC 2 cut(s) 304, 331
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 3 cut(s) 154, 278, 395
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 2 cut(s) 304, 331
Aor13HI TCCGGA 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 151
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 10
BceAI ACGGC 3 cut(s) 30, 45, 225
BciT130I CCWGG 1 cut(s) 147
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 4 cut(s) 6, 61, 70, 106
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 87
BoxI GACNNNNGTC 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 328
BseMII CTCAG 1 cut(s) 113
BseRI GAGGAG 2 cut(s) 102, 105
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 3 cut(s) 66, 72, 108
BsmI GAATGC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 5 cut(s) 98, 156, 245, 296, 323
BspACI CCGC 5 cut(s) 8, 10, 21, 84, 255
BspCNI CTCAG 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 1 cut(s) 10
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 4 cut(s) 6, 61, 70, 106
BspPI GGATC 2 cut(s) 304, 331
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 5 cut(s) 98, 156, 245, 296, 323
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 17, 21, 230
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 5 cut(s) 101, 159, 248, 299, 326
BstMBI GATC 5 cut(s) 98, 156, 245, 296, 323
BstMWI GCNNNNNNNGC 5 cut(s) 16, 29, 66, 75, 198
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 145
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 248
BstYI RGATCY 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 17, 21, 230
CciI TCATGA 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 65
Cfr42I CCGCGG 1 cut(s) 11
CseI GACGC 2 cut(s) 29, 149
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 118, 181, 218
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 122
DpnI GATC 5 cut(s) 100, 158, 247, 298, 325
DpnII GATC 5 cut(s) 98, 156, 245, 296, 323
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 2 cut(s) 99, 270
Eco24I GRGCYC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 3 cut(s) 121, 184, 221
FaiI YATR 5 cut(s) 119, 182, 197, 219, 384
FatI CATG 3 cut(s) 117, 180, 217
FauI CCCGC 2 cut(s) 3, 28
Fnu4HI GCNGC 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HapII CCGG 3 cut(s) 66, 72, 108
HgaI GACGC 2 cut(s) 29, 149
Hin1II CATG 3 cut(s) 121, 184, 221
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 1 cut(s) 305
HpaII CCGG 3 cut(s) 66, 72, 108
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 72, 181
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 4 cut(s) 31, 45, 51, 143
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 29, 66, 75, 198
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 3 cut(s) 121, 184, 221
Kpn2I TCCGGA 1 cut(s) 71
KspI CCGCGG 1 cut(s) 11
Kzo9I GATC 5 cut(s) 98, 156, 245, 296, 323
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 4 cut(s) 10, 65, 74, 148
LpnPI CCDG 8 cut(s) 18, 79, 85, 87, 121, 132, 159, 234
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 205, 378
MalI GATC 5 cut(s) 100, 158, 247, 298, 325
MboI GATC 5 cut(s) 98, 156, 245, 296, 323
MboII GAAGA 2 cut(s) 166, 206
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 278, 385
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 8 cut(s) 50, 80, 83, 86, 117, 185, 197, 248
MroI TCCGGA 1 cut(s) 71
MseI TTAA 1 cut(s) 287
MspA1I CMGCKG 2 cut(s) 10, 23
MspI CCGG 3 cut(s) 66, 72, 108
MspR9I CCNGG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 5 cut(s) 16, 29, 66, 75, 198
NdeII GATC 5 cut(s) 98, 156, 245, 296, 323
NlaIII CATG 3 cut(s) 121, 184, 221
NlaIV GGNNCC 4 cut(s) 6, 61, 70, 106
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 121
PagI TCATGA 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PshAI GACNNNNGTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 4 cut(s) 6, 61, 70, 106
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SacII CCGCGG 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 5 cut(s) 98, 156, 245, 296, 323
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 17
SetI ASST 4 cut(s) 106, 128, 234, 240
SfaNI GCATC 1 cut(s) 87
Sfr303I CCGCGG 1 cut(s) 11
SgrBI CCGCGG 1 cut(s) 11
Sse9I AATT 2 cut(s) 278, 385
SsiI CCGC 5 cut(s) 8, 10, 21, 84, 255
SspI AATATT 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 332
TasI AATT 2 cut(s) 278, 385
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 184, 206
TspGWI ACGGA 1 cut(s) 149
XceI RCATGY 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.