Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

65097086 .. 65097418

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCGAGGCTCATCTCAGTCCCAAGCGACGTCGTCTTCCACGACCTCACGCCCCGGCGTCATGGCTCCTCGCGGTTCAGCTGCCGCCACAGCTGGAATGCGCCGCCGTCGTCTCGGCGGAGGCGGCAACTCCAGCTCCGGAAGCATGGGCGGCGGCGGCGGCGGGTCTGGTGCCGGAAACAACATGCTCAGGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCGTTCTCGTCATGAGCCTCTGCTTCATTGGCTTCGTCACCGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCTACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

111

Amino Acids

10.94

Weight (kDa)

11.72

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	60 - 99	1.1e-18	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	140
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	83, 95, 138, 301, 329
AluI	AGCT	5 cut(s)	83, 95, 138, 301, 329
Alw26I	GTCTC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	30, 283
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	8 cut(s)	84, 87, 106, 127, 154, 157, 160, 163
BlsI	GCNGC	8 cut(s)	85, 88, 107, 128, 155, 158, 161, 164
Bme1390I	CCNGG	2 cut(s)	57, 216
BmeT110I	CYCGRG	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	69, 175
BmrFI	CCNGG	2 cut(s)	57, 216
BpiI	GAAGAC	2 cut(s)	30, 283
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	32, 205
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	57, 141, 177, 321
BslFI	GGGAC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	6
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	225, 314
BspCNI	CTCAG	2 cut(s)	31, 204
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	69, 175
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	225, 314
BssNI	GRCGYC	2 cut(s)	32, 60
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	18, 191
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	228, 317
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	225, 314
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 126, 135, 144, 153, 159, 162, 267
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	55, 214
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	2 cut(s)	30, 283
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	320
CseI	GACGC	2 cut(s)	49, 218
CviAII	CATG	4 cut(s)	64, 148, 187, 250
DdeI	CTNAG	2 cut(s)	18, 191
DpnI	GATC	2 cut(s)	227, 316
DpnII	GATC	2 cut(s)	225, 314
EciI	GGCGGA	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	67, 151, 190, 253
FaiI	YATR	4 cut(s)	65, 149, 188, 251
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	63, 147, 186, 249
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	8 cut(s)	84, 87, 106, 127, 154, 157, 160, 163
Fsp4HI	GCNGC	8 cut(s)	84, 87, 106, 127, 154, 157, 160, 163
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	8 cut(s)	84, 87, 106, 127, 154, 157, 160, 163
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	4 cut(s)	57, 141, 177, 321
HgaI	GACGC	2 cut(s)	49, 218
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	4 cut(s)	67, 151, 190, 253
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	4 cut(s)	57, 141, 177, 321
HphI	GGTGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	6 cut(s)	34, 37, 114, 209, 212, 242
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 126, 135, 144, 153, 159, 162, 267
HpyF3I	CTNAG	2 cut(s)	18, 191
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	4 cut(s)	67, 151, 190, 253
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	225, 314
LmnI	GCTCC	4 cut(s)	73, 143, 217, 326
LpnPI	CCDG	9 cut(s)	70, 81, 148, 154, 156, 178, 190, 201, 228
Lsp1109I	GCAGC	1 cut(s)	70
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	227, 316
MboI	GATC	2 cut(s)	225, 314
MboII	GAAGA	3 cut(s)	30, 235, 283
MflI	RGATCY	1 cut(s)	225
MnlI	CCTC	6 cut(s)	58, 81, 116, 266, 293, 317
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	331
MspA1I	CMGCKG	2 cut(s)	83, 95
MspI	CCGG	4 cut(s)	57, 141, 177, 321
MspR9I	CCNGG	2 cut(s)	57, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	8 cut(s)	92, 126, 135, 144, 153, 159, 162, 267
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	225, 314
NlaIII	CATG	4 cut(s)	67, 151, 190, 253
NlaIV	GGNNCC	2 cut(s)	69, 175
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	8 cut(s)	85, 88, 107, 128, 155, 158, 161, 164
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	69, 175
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	83, 95
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	8 cut(s)	84, 87, 106, 127, 154, 157, 160, 163
Sau3AI	GATC	2 cut(s)	225, 314
ScrFI	CCNGG	2 cut(s)	57, 216
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	55, 214
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	35, 291
TaqI	TCGA	1 cut(s)	7
TauI	GCSGC	7 cut(s)	89, 108, 129, 156, 159, 162, 165
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.