Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

67754316 .. 67754648

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCAAGGCTCATCTCAATCCCAAGCGACGTCGTCTTCCACGACCTCACACCTCGGCGTCATGGTTCCTCATGGTTCAGCTGTTGCCACAGCTGGAATGCACAGCCGTCGTATCTGTGGAGGCGGTAACTCCAGCTCCGGAGGCATGGGCGGCAGTGGCGGTGGCTCTGGGGCCGAAAACAACATACTCAGGTTCTACACCGACGACGCTCCCAGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACTGCCCTCCACGTCTTCGGCAAGCTCCACCTCCACCGATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

111

Amino Acids

11.0

Weight (kDa)

9.38

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	61 - 99	2.8e-15	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	4 cut(s)	126, 153, 162, 324
AclWI	GGATC	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	6 cut(s)	83, 95, 138, 219, 301, 329
AluI	AGCT	6 cut(s)	83, 95, 138, 219, 301, 329
AlwI	GGATC	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	30, 283
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	69, 175
BpiI	GAAGAC	2 cut(s)	30, 283
BpmI	CTGGAG	1 cut(s)	118
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	320
BseAI	TCCGGA	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	141, 321
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	225, 314
BspACI	CCGC	4 cut(s)	126, 153, 162, 324
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	69, 175
BspPI	GGATC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	225, 314
BssNI	GRCGYC	2 cut(s)	32, 60
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	228, 317
BstMBI	GATC	2 cut(s)	225, 314
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 153, 159, 267
BstV2I	GAAGAC	2 cut(s)	30, 283
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	176
BtrI	CACGTC	1 cut(s)	289
BtsI	GCAGTG	2 cut(s)	163, 276
BtsIMutI	CAGTG	2 cut(s)	163, 276
Cac8I	GCNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	2 cut(s)	49, 218
CviAII	CATG	5 cut(s)	64, 74, 148, 241, 250
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	227, 316
DpnII	GATC	2 cut(s)	225, 314
FaeI	CATG	5 cut(s)	67, 77, 151, 244, 253
FaiI	YATR	6 cut(s)	65, 75, 149, 188, 242, 251
FatI	CATG	5 cut(s)	63, 73, 147, 240, 249
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	141, 321
HgaI	GACGC	2 cut(s)	49, 218
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	5 cut(s)	67, 77, 151, 244, 253
HpaII	CCGG	2 cut(s)	141, 321
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	5 cut(s)	34, 37, 114, 209, 212
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 153, 159, 267
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	5 cut(s)	67, 77, 151, 244, 253
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	225, 314
LmnI	GCTCC	4 cut(s)	143, 217, 306, 326
LpnPI	CCDG	6 cut(s)	81, 148, 154, 156, 178, 229
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	2 cut(s)	128, 274
MalI	GATC	2 cut(s)	227, 316
MboI	GATC	2 cut(s)	225, 314
MboII	GAAGA	3 cut(s)	30, 235, 283
MflI	RGATCY	1 cut(s)	225
MnlI	CCTC	8 cut(s)	58, 65, 81, 116, 137, 266, 293, 317
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	83, 95
MspI	CCGG	2 cut(s)	141, 321
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	144, 153, 159, 267
NdeII	GATC	2 cut(s)	225, 314
NlaIII	CATG	5 cut(s)	67, 77, 151, 244, 253
NlaIV	GGNNCC	2 cut(s)	69, 175
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	69, 175
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	83, 95
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	2 cut(s)	225, 314
Sau96I	GGNCC	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	4 cut(s)	126, 153, 162, 324
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	35, 291
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	2 cut(s)	163, 283
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	163, 283
Tth111I	GACNNNGTC	1 cut(s)	34
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.