Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

29994022 .. 29994363

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTCGAGGCTCATCTCAATCCCAAGCGACATCGTCTTCCACGACCTCACGCCCCGACGTCATGGCTCCTCGTGGTTCAGCTGCTGCCACAGCTGGAATGCGCAGCCGTCGTATCGGTGGAGGAGGCAACTCCAGCTCCAGAGGCATAGGCAGCAGTGGTGGTGGCTTTGGTGCCGGAAACAACATACTCAGGTTTAGGTTCTACACCGACGACGCTCCTGGCTTGAAGCTCTCCCCCACCGTCATGCTCATCATGAGCCTTTGCTTCATCGGCTTCATCACTGCTCTCCACGTCTTCGGCAAGCTCTACTACCTCCACTTATCCACCGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

113

Amino Acids

11.57

Weight (kDa)

11.22

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	67 - 101	1.7e-13	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc16I	TGCGCA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	6 cut(s)	83, 95, 138, 232, 307, 338
AluI	AGCT	6 cut(s)	83, 95, 138, 232, 307, 338
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	6
ApeKI	GCWGC	4 cut(s)	83, 86, 105, 153
AspLEI	GCGC	1 cut(s)	105
AvaI	CYCGRG	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	30, 289
BbvI	GCAGC	4 cut(s)	70, 73, 117, 165
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	222
BisI	GCNGC	4 cut(s)	84, 87, 106, 154
BlsI	GCNGC	4 cut(s)	85, 88, 107, 155
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	69, 175
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	2 cut(s)	30, 289
BpmI	CTGGAG	2 cut(s)	118, 124
BsaHI	GRCGYC	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	60, 138
BseXI	GCAGC	4 cut(s)	70, 73, 117, 165
BshNI	GGYRCC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	177, 330
BsmI	GAATGC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	69, 175
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 135, 144, 153, 273
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	4 cut(s)	70, 73, 117, 165
BstV2I	GAAGAC	2 cut(s)	30, 289
BtrI	CACGTC	1 cut(s)	295
BtsI	GCAGTG	2 cut(s)	163, 282
BtsIMutI	CAGTG	2 cut(s)	163, 282
Cac8I	GCNNGC	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	329
CseI	GACGC	1 cut(s)	224
CviAII	CATG	3 cut(s)	64, 247, 256
DdeI	CTNAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	67, 250, 259
FaiI	YATR	5 cut(s)	65, 149, 188, 248, 257
FatI	CATG	3 cut(s)	63, 246, 255
Fnu4HI	GCNGC	4 cut(s)	84, 87, 106, 154
Fsp4HI	GCNGC	4 cut(s)	84, 87, 106, 154
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	84, 87, 106, 154
GsuI	CTGGAG	2 cut(s)	118, 124
HapII	CCGG	2 cut(s)	177, 330
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	67, 250, 259
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	177, 330
Hpy188III	TCNNGA	2 cut(s)	141, 256
Hpy99I	CGWCG	4 cut(s)	62, 114, 215, 218
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	60, 294
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 135, 144, 153, 273
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	60, 294
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	67, 250, 259
HspAI	GCGC	1 cut(s)	103
LmnI	GCTCC	4 cut(s)	73, 143, 223, 335
LpnPI	CCDG	7 cut(s)	81, 148, 154, 178, 190, 207, 234
Lsp1109I	GCAGC	4 cut(s)	70, 73, 117, 165
MaeII	ACGT	2 cut(s)	60, 294
MboII	GAAGA	2 cut(s)	30, 289
MnlI	CCTC	6 cut(s)	58, 81, 116, 119, 137, 326
MseI	TTAA	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	83, 95
MspI	CCGG	2 cut(s)	177, 330
MspR9I	CCNGG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	92, 135, 144, 153, 273
NlaIII	CATG	3 cut(s)	67, 250, 259
NlaIV	GGNNCC	2 cut(s)	69, 175
NsbI	TGCGCA	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	85, 88, 107, 155
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	69, 175
PspXI	VCTCGAGB	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	86
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	83, 95
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	4 cut(s)	84, 87, 106, 154
ScrFI	CCNGG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	63, 297
TaqI	TCGA	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	2 cut(s)	163, 289
TseI	GCWGC	4 cut(s)	83, 86, 105, 153
TspDTI	ATGAA	2 cut(s)	259, 268
TspRI	CASTG	2 cut(s)	163, 289
Tth111I	GACNNNGTC	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.