RchiOBHm_Chr7g0218951

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001066
Physical Location & Seq
Forward (+)
37163974 .. 37164243
270 bp
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UTR
Exon/CDS
Intron
PRQ19601

Sequence Viewer

Length: 270 bp
ATGGCTCCTCGTGGTTCAGCAACTGCCACAGCTGGAATGCGCAGCCGTCGTATCGGTGGAGGTGGCAACTCCAGCTCCGGAGGCATGGGCGGCAGTGGCGGTGGCTCTAGTGCCGGAAACAACATACTAAGGTTCTACGCCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCATCATGCTCGTCATGAGCCTCTGCTTCATTGGCTTCATCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCATCGGCGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

89

Amino Acids

8.89

Weight (kDa)

10.91

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 39 - 78 5.4e-15 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 3 cut(s) 90, 99, 261
AclWI GGATC 1 cut(s) 246
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 32, 75, 238, 266
AluI AGCT 4 cut(s) 32, 75, 238, 266
AlwI GGATC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 42
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 182, 263
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 162
BisI GCNGC 2 cut(s) 43, 91
BlsI GCNGC 2 cut(s) 44, 92
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 78, 114
BsmI GAATGC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 162, 251
BspACI CCGC 3 cut(s) 90, 99, 261
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 246
BssMI GATC 2 cut(s) 162, 251
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 165, 254
BstMBI GATC 2 cut(s) 162, 251
BstMWI GCNNNNNNNGC 6 cut(s) 72, 81, 90, 96, 146, 204
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BtrI CACGTC 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 100, 213
BtsIMutI CAGTG 2 cut(s) 100, 213
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 155
CviAII CATG 3 cut(s) 85, 178, 187
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 164, 253
DpnII GATC 2 cut(s) 162, 251
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 88, 181, 190
FaiI YATR 4 cut(s) 86, 125, 179, 188
FatI CATG 3 cut(s) 84, 177, 186
Fnu4HI GCNGC 2 cut(s) 43, 91
Fsp4HI GCNGC 2 cut(s) 43, 91
FspBI CTAG 1 cut(s) 108
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 43, 91
GsuI CTGGAG 1 cut(s) 55
HapII CCGG 2 cut(s) 78, 114
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 42
Hin1II CATG 3 cut(s) 88, 181, 190
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HpaII CCGG 2 cut(s) 78, 114
Hpy188III TCNNGA 2 cut(s) 78, 187
Hpy99I CGWCG 3 cut(s) 51, 146, 149
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 81, 90, 96, 146, 204
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 88, 181, 190
HspAI GCGC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 2 cut(s) 162, 251
LmnI GCTCC 4 cut(s) 10, 80, 154, 263
LpnPI CCDG 6 cut(s) 18, 85, 91, 127, 138, 165
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 164, 253
MboI GATC 2 cut(s) 162, 251
MboII GAAGA 2 cut(s) 172, 220
MflI RGATCY 1 cut(s) 162
MnlI CCTC 6 cut(s) 18, 53, 74, 203, 230, 254
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 78, 114
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 72, 81, 90, 96, 146, 204
NdeII GATC 2 cut(s) 162, 251
NlaIII CATG 3 cut(s) 88, 181, 190
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 44, 92
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 2 cut(s) 43, 91
Sau3AI GATC 2 cut(s) 162, 251
ScrFI CCNGG 1 cut(s) 153
SetI ASST 8 cut(s) 34, 64, 77, 134, 228, 240, 246, 268
SmiMI CAYNNNNRTG 1 cut(s) 176
SsiI CCGC 3 cut(s) 90, 99, 261
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 228
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TscAI CASTG 2 cut(s) 100, 220
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 190, 199
TspRI CASTG 2 cut(s) 100, 220
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.