Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

36903820 .. 36904152

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG168000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGCGATGTCATCTTCCACAACCTCACGCCCCTGCGTCATGGCTCCTCCTGGTTCAGCTGCTGCCACAGCTGGAATGCGTAACCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCCGGAGGCATAGGCGGCAGCGACGGTGGCTCTGGTGTCGGAAACAACATACTCAGGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTAGTCATGAGCCTCAGCTTCATTGGCTTCGTCACTACCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCACCGACGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

110

Amino Acids

11.04

Weight (kDa)

10.01

Isoelectric Point (pI)

66.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	61 - 99	6.6e-15	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	2 cut(s)	126, 153
AclWI	GGATC	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	73, 214
AluBI	AGCT	6 cut(s)	83, 95, 138, 261, 301, 329
AluI	AGCT	6 cut(s)	83, 95, 138, 261, 301, 329
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	83, 86, 156
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BbsI	GAAGAC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	70, 73, 168
BciT130I	CCWGG	2 cut(s)	75, 216
BfaI	CTAG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	5 cut(s)	84, 87, 127, 154, 157
BlsI	GCNGC	5 cut(s)	85, 88, 128, 155, 158
Bme1390I	CCNGG	2 cut(s)	75, 216
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	75, 216
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	75, 216
BseMII	CTCAG	3 cut(s)	32, 205, 271
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	70, 73, 168
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	225, 314
BspACI	CCGC	2 cut(s)	126, 153
BspCNI	CTCAG	3 cut(s)	31, 204, 270
BspEI	TCCGGA	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	309
BssMI	GATC	2 cut(s)	225, 314
Bst2UI	CCWGG	2 cut(s)	75, 216
Bst4CI	ACNGT	3 cut(s)	110, 164, 238
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	3 cut(s)	18, 191, 257
BstKTI	GATC	2 cut(s)	228, 317
BstMBI	GATC	2 cut(s)	225, 314
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 153, 165, 267
BstNI	CCWGG	2 cut(s)	75, 216
BstSCI	CCNGG	2 cut(s)	73, 214
BstV1I	GCAGC	3 cut(s)	70, 73, 168
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	249
CseI	GACGC	2 cut(s)	49, 218
CviAII	CATG	3 cut(s)	64, 241, 250
DdeI	CTNAG	3 cut(s)	18, 191, 257
DpnI	GATC	2 cut(s)	227, 316
DpnII	GATC	2 cut(s)	225, 314
EcoRII	CCWGG	2 cut(s)	73, 214
FaeI	CATG	3 cut(s)	67, 244, 253
FaiI	YATR	5 cut(s)	65, 149, 188, 242, 251
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	3 cut(s)	63, 240, 249
Fnu4HI	GCNGC	5 cut(s)	84, 87, 127, 154, 157
Fsp4HI	GCNGC	5 cut(s)	84, 87, 127, 154, 157
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	5 cut(s)	84, 87, 127, 154, 157
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	2 cut(s)	49, 218
Hin1II	CATG	3 cut(s)	67, 244, 253
HpaII	CCGG	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	2 cut(s)	141, 250
Hpy99I	CGWCG	5 cut(s)	114, 164, 209, 212, 326
HpyCH4III	ACNGT	3 cut(s)	110, 164, 238
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 153, 165, 267
HpyF3I	CTNAG	3 cut(s)	18, 191, 257
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	67, 244, 253
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	225, 314
LmnI	GCTCC	4 cut(s)	73, 143, 217, 326
Lsp1109I	GCAGC	3 cut(s)	70, 73, 168
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	104, 274
MalI	GATC	2 cut(s)	227, 316
MboI	GATC	2 cut(s)	225, 314
MboII	GAAGA	3 cut(s)	30, 235, 283
MflI	RGATCY	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	7 cut(s)	58, 81, 116, 137, 266, 293, 317
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	83, 95
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	75, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	75, 216
MwoI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 153, 165, 267
NdeII	GATC	2 cut(s)	225, 314
NlaIII	CATG	3 cut(s)	67, 244, 253
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	5 cut(s)	85, 88, 128, 155, 158
Psp6I	CCWGG	2 cut(s)	73, 214
PspGI	CCWGG	2 cut(s)	73, 214
PspN4I	GGNNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	2 cut(s)	83, 95
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	5 cut(s)	84, 87, 127, 154, 157
Sau3AI	GATC	2 cut(s)	225, 314
ScrFI	CCNGG	2 cut(s)	75, 216
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	2 cut(s)	126, 153
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	73, 214
TaaI	ACNGT	3 cut(s)	110, 164, 238
TaiI	ACGT	1 cut(s)	291
TauI	GCSGC	2 cut(s)	129, 156
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	83, 86, 156
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	253
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.