RchiOBHm_Chr6g0302081

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001066
Physical Location & Seq
Forward (+)
62268392 .. 62268652
261 bp
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UTR
Exon/CDS
Intron
PRQ27135

Sequence Viewer

Length: 261 bp
ATGGCTCCTCGTGGTTCAGCTACTGCCACAACTGGAATGCGCAGCCGTCGTATCGGTGGAGGTGGCAACTCCAGCTCCGGAGGCATGGGCGGTGGCTCTAGTGCCAGAAACAACATACTCAGGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCTGCTTCATCACTGCCCTCCATGTCTTTGGCAAGCTCTACCTCCACCGATCCATCGGCGGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

86

Amino Acids

8.88

Weight (kDa)

10.88

Isoelectric Point (pI)

66.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 37 - 75 1.5e-15 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 2 cut(s) 90, 252
AclWI GGATC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 20, 75, 229, 257
AluI AGCT 4 cut(s) 20, 75, 229, 257
AlwI GGATC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 42
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 153
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse1I ACTGG 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 78
BsmI GAATGC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 153, 242
BspACI CCGC 2 cut(s) 90, 252
BspCNI CTCAG 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 37
BssMI GATC 2 cut(s) 153, 242
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 156, 245
BstMBI GATC 2 cut(s) 153, 242
BstMWI GCNNNNNNNGC 3 cut(s) 72, 81, 195
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 221
BstYI RGATCY 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 227
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 177
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 146
CviAII CATG 4 cut(s) 85, 169, 178, 215
CviJI RGCY 9 cut(s) 5, 20, 45, 75, 96, 147, 183, 229, 257
CviKI_1 RGCY 9 cut(s) 5, 20, 45, 75, 96, 147, 183, 229, 257
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 155, 244
DpnII GATC 2 cut(s) 153, 242
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 88, 172, 181, 218
FaiI YATR 5 cut(s) 86, 116, 170, 179, 216
FatI CATG 4 cut(s) 84, 168, 177, 214
Fnu4HI GCNGC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 99
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 55
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 42
Hin1II CATG 4 cut(s) 88, 172, 181, 218
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HpaII CCGG 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 78, 178
Hpy99I CGWCG 3 cut(s) 51, 137, 140
HpyCH4III ACNGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 81, 195
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 4 cut(s) 88, 172, 181, 218
HspAI GCGC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 2 cut(s) 153, 242
LmnI GCTCC 4 cut(s) 10, 80, 145, 254
LpnPI CCDG 7 cut(s) 18, 85, 91, 106, 118, 129, 156
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 99
MalI GATC 2 cut(s) 155, 244
MboI GATC 2 cut(s) 153, 242
MboII GAAGA 1 cut(s) 163
MflI RGATCY 1 cut(s) 153
MnlI CCTC 6 cut(s) 18, 53, 74, 194, 221, 245
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 259
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 72, 81, 195
NdeII GATC 2 cut(s) 153, 242
NlaIII CATG 4 cut(s) 88, 172, 181, 218
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 177
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 259
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 153, 242
ScrFI CCNGG 1 cut(s) 144
SetI ASST 7 cut(s) 22, 64, 77, 125, 231, 237, 259
SmiMI CAYNNNNRTG 1 cut(s) 167
SsiI CCGC 2 cut(s) 90, 252
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 166
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 181, 190
TspRI CASTG 1 cut(s) 211
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.