Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

32246491 .. 32246835

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG289800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGTGACGTCGTCTTCCACTACCTCACGACCCGGCGTCATGGCTCCTCATGGTTTAGCTGCTGCCATAGCTGGAATGCGCAGCCGTTGTATCGGTGGAGGCGGCAACTCCAGCTCCAGAGGCATGGGCGACAGCGGCGGTGGCTCTGGTGCCGGAAACAACATACTCAGGTTCTACACTGACGACACTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCATCATGAGCCTATGCTTCATCGGCTTCGTCACTACCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGCCACCGACGGAGCTTAAATTCCGGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

114

Amino Acids

11.71

Weight (kDa)

10.85

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	60 - 99	2.8e-15	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	4 cut(s)	126, 159, 162, 313
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	223
AhdI	GACNNNNNGTC	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	83, 95, 138, 301, 327
AluI	AGCT	5 cut(s)	83, 95, 138, 301, 327
Aor13HI	TCCGGA	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	83, 86, 105
ApoI	RAATTY	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	30, 283
BbvI	GCAGC	3 cut(s)	70, 73, 117
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	57
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	5 cut(s)	84, 87, 106, 127, 160
BlsI	GCNGC	5 cut(s)	85, 88, 107, 128, 161
Bme1390I	CCNGG	2 cut(s)	57, 216
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	69, 175
BmrFI	CCNGG	2 cut(s)	57, 216
BpiI	GAAGAC	2 cut(s)	30, 283
BpmI	CTGGAG	2 cut(s)	118, 124
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseAI	TCCGGA	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	32, 205
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	70, 73, 117
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	57, 177, 336
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	225, 338
BspACI	CCGC	4 cut(s)	126, 159, 162, 313
BspCNI	CTCAG	2 cut(s)	31, 204
BspEI	TCCGGA	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	69, 175
BspT107I	GGYRCC	1 cut(s)	173
BssMI	GATC	2 cut(s)	225, 338
BssNI	GRCGYC	2 cut(s)	32, 60
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	18, 191
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	228, 341
BstMBI	GATC	2 cut(s)	225, 338
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 159, 165, 267
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	55, 214
BstV1I	GCAGC	3 cut(s)	70, 73, 117
BstV2I	GAAGAC	2 cut(s)	30, 283
BstX2I	RGATCY	2 cut(s)	225, 338
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	2 cut(s)	225, 338
BtrI	CACGTC	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	299
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	1 cut(s)	49
CviAII	CATG	5 cut(s)	64, 74, 148, 241, 250
DdeI	CTNAG	2 cut(s)	18, 191
DpnI	GATC	2 cut(s)	227, 340
DpnII	GATC	2 cut(s)	225, 338
DriI	GACNNNNNGTC	1 cut(s)	59
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	5 cut(s)	67, 77, 151, 244, 253
FaiI	YATR	8 cut(s)	65, 75, 92, 149, 188, 242, 251, 259
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	5 cut(s)	63, 73, 147, 240, 249
Fnu4HI	GCNGC	5 cut(s)	84, 87, 106, 127, 160
Fsp4HI	GCNGC	5 cut(s)	84, 87, 106, 127, 160
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	84, 87, 106, 127, 160
GsuI	CTGGAG	2 cut(s)	118, 124
HapII	CCGG	3 cut(s)	57, 177, 336
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	5 cut(s)	67, 77, 151, 244, 253
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	3 cut(s)	57, 177, 336
Hpy188III	TCNNGA	4 cut(s)	51, 141, 250, 336
Hpy99I	CGWCG	2 cut(s)	37, 324
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	2 cut(s)	32, 288
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 159, 165, 267
HpyF3I	CTNAG	2 cut(s)	18, 191
HpySE526I	ACGT	2 cut(s)	32, 288
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	5 cut(s)	67, 77, 151, 244, 253
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	225, 338
LmnI	GCTCC	3 cut(s)	73, 143, 324
LpnPI	CCDG	9 cut(s)	70, 81, 148, 154, 156, 178, 190, 201, 228
Lsp1109I	GCAGC	3 cut(s)	70, 73, 117
MaeII	ACGT	2 cut(s)	32, 288
MaeIII	GTNAC	2 cut(s)	28, 274
MalI	GATC	2 cut(s)	227, 340
MboI	GATC	2 cut(s)	225, 338
MboII	GAAGA	3 cut(s)	30, 235, 283
MflI	RGATCY	2 cut(s)	225, 338
MluCI	AATT	1 cut(s)	331
MnlI	CCTC	6 cut(s)	58, 81, 116, 137, 293, 317
MroI	TCCGGA	1 cut(s)	335
MseI	TTAA	2 cut(s)	329, 343
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	3 cut(s)	57, 177, 336
MspR9I	CCNGG	2 cut(s)	57, 216
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	6 cut(s)	92, 135, 144, 159, 165, 267
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	225, 338
NlaIII	CATG	5 cut(s)	67, 77, 151, 244, 253
NlaIV	GGNNCC	2 cut(s)	69, 175
NmuCI	GTSAC	2 cut(s)	28, 274
NsbI	TGCGCA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	85, 88, 107, 128, 161
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	69, 175
PsuI	RGATCY	2 cut(s)	225, 338
PsyI	GACNNNGTC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	329, 343
SatI	GCNGC	5 cut(s)	84, 87, 106, 127, 160
Sau3AI	GATC	2 cut(s)	225, 338
ScrFI	CCNGG	2 cut(s)	57, 216
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	4 cut(s)	126, 159, 162, 313
StyD4I	CCNGG	2 cut(s)	55, 214
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	2 cut(s)	35, 291
TasI	AATT	1 cut(s)	331
TauI	GCSGC	2 cut(s)	129, 162
Tru1I	TTAA	2 cut(s)	329, 343
Tru9I	TTAA	2 cut(s)	329, 343
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	28, 274
TseI	GCWGC	3 cut(s)	83, 86, 105
Tsp45I	GTSAC	2 cut(s)	28, 274
TspDTI	ATGAA	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	208
Tth111I	GACNNNGTC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	331
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.