Rh5DG559500

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001066
Physical Location & Seq
Forward (+)
86345596 .. 86345859
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG559500.1

Sequence Viewer

Length: 264 bp
ATGGCTCCTCGTGGTTCAGCTACTGCCATAGCTGGAATGCGCAGCTGTCGTATTGGTGGAGGTGGCAACTCCAGCTCCGGAGTCATGGGCGGCAGAGGCGGTGGCTCTAGTGCCAGAAACAATATACTCAGGTTCTACACCGACGACGCTCCTGGCTTAAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGGCTTCATCACTGCCCTCCACATCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

87

Amino Acids

8.95

Weight (kDa)

10.88

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 40 - 78 1.4e-16 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 77
AciI CCGC 2 cut(s) 90, 99
AclWI GGATC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 5 cut(s) 20, 32, 45, 75, 238
AluI AGCT 5 cut(s) 20, 32, 45, 75, 238
AlwI GGATC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 42
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 162
BisI GCNGC 2 cut(s) 43, 91
BlsI GCNGC 2 cut(s) 44, 92
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse118I RCCGGY 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 78, 258
BsmI GAATGC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 77
Bsp143I GATC 2 cut(s) 162, 251
BspACI CCGC 2 cut(s) 90, 99
BspCNI CTCAG 1 cut(s) 141
BspEI TCCGGA 1 cut(s) 77
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 2 cut(s) 162, 251
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 165, 254
BstMBI GATC 2 cut(s) 162, 251
BstMWI GCNNNNNNNGC 3 cut(s) 72, 96, 204
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 186
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 1 cut(s) 155
CviAII CATG 3 cut(s) 85, 178, 187
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 164, 253
DpnII GATC 2 cut(s) 162, 251
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 88, 181, 190
FaiI YATR 5 cut(s) 29, 86, 125, 179, 188
FatI CATG 3 cut(s) 84, 177, 186
Fnu4HI GCNGC 2 cut(s) 43, 91
Fsp4HI GCNGC 2 cut(s) 43, 91
FspBI CTAG 1 cut(s) 108
FspI TGCGCA 1 cut(s) 41
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 43, 91
GsuI CTGGAG 1 cut(s) 55
HapII CCGG 2 cut(s) 78, 258
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 42
Hin1II CATG 3 cut(s) 88, 181, 190
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 1 cut(s) 81
HpaII CCGG 2 cut(s) 78, 258
Hpy188III TCNNGA 2 cut(s) 78, 187
Hpy99I CGWCG 2 cut(s) 146, 149
HpyCH4III ACNGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 96, 204
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 3 cut(s) 88, 181, 190
HspAI GCGC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 77
Kzo9I GATC 2 cut(s) 162, 251
LmnI GCTCC 3 cut(s) 10, 80, 154
LpnPI CCDG 7 cut(s) 18, 85, 91, 115, 127, 138, 165
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 164, 253
MboI GATC 2 cut(s) 162, 251
MboII GAAGA 1 cut(s) 220
MflI RGATCY 1 cut(s) 162
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 6 cut(s) 18, 53, 89, 203, 230, 254
MroI TCCGGA 1 cut(s) 77
MseI TTAA 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 2 cut(s) 78, 258
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 72, 96, 204
NdeII GATC 2 cut(s) 162, 251
NlaIII CATG 3 cut(s) 88, 181, 190
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 41
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 44, 92
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 2 cut(s) 43, 91
Sau3AI GATC 2 cut(s) 162, 251
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 153
SetI ASST 8 cut(s) 22, 34, 47, 64, 77, 134, 240, 246
SmiMI CAYNNNNRTG 1 cut(s) 176
SsiI CCGC 2 cut(s) 90, 99
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 175
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 190, 199
TspRI CASTG 1 cut(s) 220
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.