Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

66933542 .. 66933844

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTCGTCTTCCACGACCTCACACCTCGGCGTCATGGCTCCTCGTGGTTCAGCTCTTGCCACAGCTGGAATGCGCAGCCGTCGTATCGGTGGAGGCGGCAACTCCAGCTCTGGAGGCATGGGCGGCAACAGCGGTGGCTATGGTGCCGAAAACAACATACTCAGGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCTACCGTCATGCTCGTCATGAGCCTCTGCTTCATCGGCTTCGTCACTGCCCTCCACGTCTTCGGCAAGCTCTACCTCCACCGATCCACTGGCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

100

Amino Acids

10.16

Weight (kDa)

10.17

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	51 - 89	2.9e-16	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	4 cut(s)	96, 123, 132, 294
AclWI	GGATC	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	5 cut(s)	53, 65, 108, 271, 299
AluI	AGCT	5 cut(s)	53, 65, 108, 271, 299
AlwI	GGATC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	87
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	186
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	3 cut(s)	76, 97, 124
BlsI	GCNGC	3 cut(s)	77, 98, 125
Bme1390I	CCNGG	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	39, 145
BmrFI	CCNGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	253
BpmI	CTGGAG	2 cut(s)	88, 132
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	195, 284
BspACI	CCGC	4 cut(s)	96, 123, 132, 294
BspCNI	CTCAG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	39, 145
BspPI	GGATC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	195, 284
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	198, 287
BstMBI	GATC	2 cut(s)	195, 284
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 114, 123, 129, 237
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 288
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	75
CseI	GACGC	2 cut(s)	19, 188
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	4 cut(s)	34, 118, 211, 220
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	197, 286
DpnII	GATC	2 cut(s)	195, 284
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	37, 121, 214, 223
FaiI	YATR	6 cut(s)	35, 119, 141, 158, 212, 221
FatI	CATG	4 cut(s)	33, 117, 210, 219
Fnu4HI	GCNGC	3 cut(s)	76, 97, 124
Fsp4HI	GCNGC	3 cut(s)	76, 97, 124
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	76, 97, 124
GsuI	CTGGAG	2 cut(s)	88, 132
HgaI	GACGC	2 cut(s)	19, 188
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	37, 121, 214, 223
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	111, 220
Hpy99I	CGWCG	3 cut(s)	84, 179, 182
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 114, 123, 129, 237
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	37, 121, 214, 223
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	195, 284
LmnI	GCTCC	3 cut(s)	43, 187, 296
LpnPI	CCDG	7 cut(s)	51, 96, 118, 148, 171, 198, 276
Lsp1109I	GCAGC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	197, 286
MboI	GATC	2 cut(s)	195, 284
MboII	GAAGA	2 cut(s)	205, 253
MflI	RGATCY	1 cut(s)	195
MnlI	CCTC	8 cut(s)	28, 35, 51, 86, 107, 236, 263, 287
MseI	TTAA	1 cut(s)	301
MspA1I	CMGCKG	2 cut(s)	65, 132
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	5 cut(s)	105, 114, 123, 129, 237
NdeII	GATC	2 cut(s)	195, 284
NlaIII	CATG	4 cut(s)	37, 121, 214, 223
NlaIV	GGNNCC	2 cut(s)	39, 145
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	74
PagI	TCATGA	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	77, 98, 125
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	39, 145
PsuI	RGATCY	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	3 cut(s)	76, 97, 124
Sau3AI	GATC	2 cut(s)	195, 284
ScrFI	CCNGG	1 cut(s)	186
SsiI	CCGC	4 cut(s)	96, 123, 132, 294
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	261
TauI	GCSGC	2 cut(s)	99, 126
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TscAI	CASTG	2 cut(s)	253, 295
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	253, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.