Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

12153270 .. 12153640

Gene Structure 371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1132800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTCGAGGTTCATCTCAGTCGCAAGCGACGTCGTCCTCTGCGACCTCGCGCCCCGGCGTCATGGCTCCGAGGGGCTCGGCTGCCGCGACGGCTGGAATGCGTCGTCGTCGTATTGGAGGCTCCACCAGCTCCGGAAGCATCGGCGGAGGCGGAGGCGGGTCCGGTGCCGGAAACAACATGCTGAGATTCTACACGGACGACGCTCCTGGCTTGAAGATCACCCCGACTGTTGTCCTTGTCATGAGCCTCTGCTTCATCGGCTTCGTCACGGCTCTTCATGTGTTCGGCAAGCTGTACCTCCACCGATCTGGTGGCGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

109

Amino Acids

10.74

Weight (kDa)

11.72

Isoelectric Point (pI)

62.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	58 - 97	1.9e-18	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	2 cut(s)	52, 89
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	5 cut(s)	87, 147, 153, 159, 318
AcyI	GRCGYC	2 cut(s)	32, 60
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	132, 295, 323
AluI	AGCT	3 cut(s)	132, 295, 323
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	108, 288
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	2 cut(s)	57, 210
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	4 cut(s)	69, 124, 163, 169
BmrFI	CCNGG	2 cut(s)	57, 210
BmsI	GCATC	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	2 cut(s)	55, 71
BsaWI	WCCGGW	2 cut(s)	134, 164
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	55, 71
BseMII	CTCAG	2 cut(s)	32, 176
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	2 cut(s)	52, 89
BshNI	GGYRCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	57, 135, 165, 171
BsmI	GAATGC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	219, 308
BspACI	CCGC	5 cut(s)	87, 147, 153, 159, 318
BspCNI	CTCAG	2 cut(s)	31, 177
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	2 cut(s)	52, 89
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	4 cut(s)	69, 124, 163, 169
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	55, 71
BssMI	GATC	2 cut(s)	219, 308
BssNI	GRCGYC	2 cut(s)	32, 60
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	2 cut(s)	27, 293
BstDEI	CTNAG	2 cut(s)	18, 185
BstFNI	CGCG	2 cut(s)	52, 89
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	222, 311
BstMBI	GATC	2 cut(s)	219, 308
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 129, 138, 261
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	55, 208
BstUI	CGCG	2 cut(s)	52, 89
BstV1I	GCAGC	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	27, 293
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	3 cut(s)	49, 92, 212
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	64, 181, 244, 281
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	18, 185
DpnI	GATC	2 cut(s)	221, 310
DpnII	GATC	2 cut(s)	219, 308
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	162, 168
Eco24I	GRGCYC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	4 cut(s)	67, 184, 247, 284
FaiI	YATR	4 cut(s)	65, 182, 245, 282
FatI	CATG	4 cut(s)	63, 180, 243, 280
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	84, 87
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	84, 87
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	84, 87
HapII	CCGG	4 cut(s)	57, 135, 165, 171
HgaI	GACGC	3 cut(s)	49, 92, 212
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	4 cut(s)	67, 184, 247, 284
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	4 cut(s)	57, 135, 165, 171
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	135, 244
Hpy99I	CGWCG	7 cut(s)	34, 37, 94, 108, 111, 114, 206
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 129, 138, 261
HpyF3I	CTNAG	2 cut(s)	18, 185
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	4 cut(s)	67, 184, 247, 284
HspAI	GCGC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	219, 308
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	5 cut(s)	73, 128, 137, 211, 320
LpnPI	CCDG	9 cut(s)	70, 81, 142, 148, 178, 184, 195, 222, 297
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	221, 310
MboI	GATC	2 cut(s)	219, 308
MboII	GAAGA	2 cut(s)	229, 269
MhlI	GDGCHC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	49, 58, 66, 113, 143, 149, 260, 311
MroI	TCCGGA	1 cut(s)	134
MspI	CCGG	4 cut(s)	57, 135, 165, 171
MspR9I	CCNGG	2 cut(s)	57, 210
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	52, 89
MwoI	GCNNNNNNNGC	4 cut(s)	92, 129, 138, 261
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	219, 308
NlaIII	CATG	4 cut(s)	67, 184, 247, 284
NlaIV	GGNNCC	4 cut(s)	69, 124, 163, 169
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	6
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 41, 86
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	85, 88
PshAI	GACNNNNGTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	69, 124, 163, 169
PspPI	GGNCC	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	2 cut(s)	219, 308
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	57, 210
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	7 cut(s)	13, 35, 50, 134, 297, 303, 325
SfaNI	GCATC	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	5 cut(s)	87, 147, 153, 159, 318
StyD4I	CCNGG	2 cut(s)	55, 208
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	7
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	247, 269
TspGWI	ACGGA	1 cut(s)	212
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XhoI	CTCGAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.