Rh6DG120500

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001066
Physical Location & Seq
Reverse (-)
16559381 .. 16559713
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG120500.1

Sequence Viewer

Length: 333 bp
ATGGCTCAAGGCTCATCTCAGTCCCAAGCAACGTCGTCTTCCACGACCTCACACCCCGGCGTCATAGCTCCTCGTGGTTCAGCTGCTGCCACAGCTGGAATGCACAGCCGTCGTATCGGTGGAGGCGACAACTCCAGCTCTAGAGGCATGGGAGGTAGCGGCGGTGGCTCTGGTGCCGGAAACAACATACTCAAGTTCTACACCGACGACGCTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTATGCTTCATCGGCTTCGTCACTGGCCTCCACGTCTTCGGCAAGCTCTCCCTCCACCGATCCACCGGCGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

110

Amino Acids

10.89

Weight (kDa)

10.02

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 60 - 99 2.2e-15 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 3 cut(s) 159, 162, 324
AclWI GGATC 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 60
AgsI TTSAA 1 cut(s) 223
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 5 cut(s) 68, 83, 95, 138, 301
AluI AGCT 5 cut(s) 68, 83, 95, 138, 301
AlwI GGATC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 83, 86
AsuC2I CCSGG 1 cut(s) 57
BanI GGYRCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 72
BbsI GAAGAC 2 cut(s) 30, 283
BbvI GCAGC 2 cut(s) 70, 73
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 141
BglII AGATCT 1 cut(s) 225
BisI GCNGC 3 cut(s) 84, 87, 160
BlsI GCNGC 3 cut(s) 85, 88, 161
Bme1390I CCNGG 2 cut(s) 57, 216
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 57, 216
BpiI GAAGAC 2 cut(s) 30, 283
BpmI CTGGAG 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 70, 73
BshFI GGCC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 3 cut(s) 57, 177, 321
BslFI GGGAC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 225, 314
BspACI CCGC 3 cut(s) 159, 162, 324
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 225, 314
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 2 cut(s) 228, 317
BstMBI GATC 2 cut(s) 225, 314
BstMWI GCNNNNNNNGC 4 cut(s) 92, 144, 165, 267
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 55, 214
BstV1I GCAGC 2 cut(s) 70, 73
BstV2I GAAGAC 2 cut(s) 30, 283
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 282
BtrI CACGTC 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 299
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 320
CseI GACGC 2 cut(s) 49, 218
CviAII CATG 3 cut(s) 148, 241, 250
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 227, 316
DpnII GATC 2 cut(s) 225, 314
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 151, 244, 253
FaiI YATR 6 cut(s) 65, 149, 188, 242, 251, 259
FaqI GGGAC 1 cut(s) 7
FatI CATG 3 cut(s) 147, 240, 249
Fnu4HI GCNGC 3 cut(s) 84, 87, 160
Fsp4HI GCNGC 3 cut(s) 84, 87, 160
FspBI CTAG 1 cut(s) 141
GluI GCNGC 3 cut(s) 84, 87, 160
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 57, 177, 321
HgaI GACGC 2 cut(s) 49, 218
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 151, 244, 253
HpaII CCGG 3 cut(s) 57, 177, 321
Hpy188III TCNNGA 2 cut(s) 141, 250
Hpy99I CGWCG 4 cut(s) 37, 114, 209, 212
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 32, 288
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 144, 165, 267
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 32, 288
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 151, 244, 253
Kzo9I GATC 2 cut(s) 225, 314
LmnI GCTCC 2 cut(s) 73, 217
LpnPI CCDG 8 cut(s) 70, 81, 148, 156, 190, 201, 228, 264
Lsp1109I GCAGC 2 cut(s) 70, 73
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 32, 288
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 227, 316
MboI GATC 2 cut(s) 225, 314
MboII GAAGA 3 cut(s) 30, 235, 283
MflI RGATCY 1 cut(s) 225
MnlI CCTC 7 cut(s) 58, 81, 116, 137, 146, 293, 317
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 83, 95
MspI CCGG 3 cut(s) 57, 177, 321
MspR9I CCNGG 2 cut(s) 57, 216
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 92, 144, 165, 267
NciI CCSGG 1 cut(s) 57
NdeII GATC 2 cut(s) 225, 314
NlaIII CATG 3 cut(s) 151, 244, 253
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 274
PagI TCATGA 1 cut(s) 249
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 123
PctI GAATGC 1 cut(s) 105
PkrI GCNGC 3 cut(s) 85, 88, 161
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 2 cut(s) 83, 95
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 3 cut(s) 84, 87, 160
Sau3AI GATC 2 cut(s) 225, 314
ScrFI CCNGG 2 cut(s) 57, 216
SetI ASST 9 cut(s) 35, 50, 70, 85, 97, 140, 157, 291, 303
SgrAI CRCCGGYG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 6, 191
SmoI CTYRAG 2 cut(s) 6, 191
SsiI CCGC 3 cut(s) 159, 162, 324
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 55, 214
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 2 cut(s) 35, 291
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 83, 86
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 253
TspRI CASTG 1 cut(s) 283
XbaI TCTAGA 1 cut(s) 140
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.