Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Forward (+)

63415838 .. 63416170

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTCAAGGCTCATCTCAGTCCCAAGCGACGTCGTCTTCCACGACCTCACGCCTCGGCGTCATGGCTCCTCGTGGTTCAGCTGCTGCCACAGCTGGAATGCACAGCTGCATGGGCTACAGCGGCAGTGGCTCTGGTGCCGGAAACAACATACTCAGGTTCTACACCGACGACACTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCTTCATGAGCCTATGCTTCATCGGCTTCGTCACTGCCCTCCACATCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

98

Amino Acids

10.06

Weight (kDa)

9.59

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	48 - 87	1e-16	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	273
AcyI	GRCGYC	2 cut(s)	32, 60
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	5 cut(s)	83, 95, 108, 265, 293
AluI	AGCT	5 cut(s)	83, 95, 108, 265, 293
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	4 cut(s)	83, 86, 108, 290
AspLEI	GCGC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	70, 73, 95
BciT130I	CCWGG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	118
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	5 cut(s)	84, 87, 109, 124, 291
BlsI	GCNGC	5 cut(s)	85, 88, 110, 125, 292
Bme1390I	CCNGG	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	69, 139
BmrFI	CCNGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	30
BsaHI	GRCGYC	2 cut(s)	32, 60
BsaJI	CCNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	32, 169
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	70, 73, 95
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	141, 285
BslFI	GGGAC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	189, 278
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	31, 168
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	69, 139
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	189, 278
BssNI	GRCGYC	2 cut(s)	32, 60
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	32, 60
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	18, 155
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	192, 281
BstMBI	GATC	2 cut(s)	189, 278
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 114, 123, 129, 231
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	70, 73, 95
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	133, 240
BtsIMutI	CAGTG	2 cut(s)	133, 240
Cac8I	GCNNGC	1 cut(s)	263
CaiI	CAGNNNCTG	1 cut(s)	86
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	284
CseI	GACGC	1 cut(s)	49
CviAII	CATG	4 cut(s)	64, 112, 205, 214
DdeI	CTNAG	2 cut(s)	18, 155
DpnI	GATC	2 cut(s)	191, 280
DpnII	GATC	2 cut(s)	189, 278
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	4 cut(s)	67, 115, 208, 217
FaiI	YATR	6 cut(s)	65, 113, 152, 206, 215, 223
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	4 cut(s)	63, 111, 204, 213
Fnu4HI	GCNGC	5 cut(s)	84, 87, 109, 124, 291
Fsp4HI	GCNGC	5 cut(s)	84, 87, 109, 124, 291
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	84, 87, 109, 124, 291
HapII	CCGG	2 cut(s)	141, 285
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	2 cut(s)	32, 60
Hin1II	CATG	4 cut(s)	67, 115, 208, 217
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HpaII	CCGG	2 cut(s)	141, 285
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	34, 37, 173
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	103, 111
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 114, 123, 129, 231
HpyF3I	CTNAG	2 cut(s)	18, 155
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	2 cut(s)	32, 60
Hsp92II	CATG	4 cut(s)	67, 115, 208, 217
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	189, 278
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	81, 120, 142, 154, 165, 192
Lsp1109I	GCAGC	3 cut(s)	70, 73, 95
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	191, 280
MboI	GATC	2 cut(s)	189, 278
MboII	GAAGA	4 cut(s)	30, 199, 202, 247
MflI	RGATCY	1 cut(s)	189
MnlI	CCTC	5 cut(s)	58, 65, 81, 257, 281
MseI	TTAA	1 cut(s)	295
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	4 cut(s)	83, 95, 108, 123
MspI	CCGG	2 cut(s)	141, 285
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	92, 114, 123, 129, 231
NdeII	GATC	2 cut(s)	189, 278
NlaIII	CATG	4 cut(s)	67, 115, 208, 217
NlaIV	GGNNCC	2 cut(s)	69, 139
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	85, 88, 110, 125, 292
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	69, 139
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	3 cut(s)	83, 95, 108
RseI	CAYNNNNRTG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	5 cut(s)	84, 87, 109, 124, 291
Sau3AI	GATC	2 cut(s)	189, 278
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	9 cut(s)	35, 50, 85, 97, 110, 161, 267, 273, 295
SfcI	CTRYAG	1 cut(s)	118
SgrAI	CRCCGGYG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	35
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TscAI	CASTG	2 cut(s)	133, 247
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	83, 86, 108, 290
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	202, 217
TspRI	CASTG	2 cut(s)	133, 247
Tth111I	GACNNNGTC	1 cut(s)	34
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.