Rh1AG401700

Sec61beta family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001066
Physical Location & Seq
Forward (+)
62851769 .. 62851954
186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG401700.1

Sequence Viewer

Length: 186 bp
ATGGGCTACAGCGGCAGTGGCTCTGGTGCCGGAAACAACATACTCAGGTTCTACACCGACGACACTCCTGGCTTGAAGATCTCCCCCACCGTCATGCTCGTCATGAGCCTATGCTTCATCGGCTTCGTCACTGCCCTCCACATCTTCGGCAAGCTCTACCTCCACCGATCCACCGGCGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

61

Amino Acids

6.46

Weight (kDa)

9.03

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 11 - 50 3e-17 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 154, 182
AluI AGCT 2 cut(s) 154, 182
AlwI GGATC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 7
BglII AGATCT 1 cut(s) 78
BisI GCNGC 2 cut(s) 13, 180
BlsI GCNGC 2 cut(s) 14, 181
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 173
BseBI CCWGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 30, 174
Bsp143I GATC 2 cut(s) 78, 167
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 2 cut(s) 78, 167
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 2 cut(s) 81, 170
BstMBI GATC 2 cut(s) 78, 167
BstMWI GCNNNNNNNGC 3 cut(s) 12, 18, 120
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtsI GCAGTG 2 cut(s) 22, 129
BtsIMutI CAGTG 2 cut(s) 22, 129
Cac8I GCNNGC 1 cut(s) 152
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 173
CviAII CATG 2 cut(s) 94, 103
CviJI RGCY 7 cut(s) 6, 21, 72, 108, 123, 154, 182
CviKI_1 RGCY 7 cut(s) 6, 21, 72, 108, 123, 154, 182
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 80, 169
DpnII GATC 2 cut(s) 78, 167
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 97, 106
FaiI YATR 4 cut(s) 41, 95, 104, 112
FatI CATG 2 cut(s) 93, 102
Fnu4HI GCNGC 2 cut(s) 13, 180
Fsp4HI GCNGC 2 cut(s) 13, 180
GlaI GCGC 1 cut(s) 178
GluI GCNGC 2 cut(s) 13, 180
HapII CCGG 2 cut(s) 30, 174
HhaI GCGC 1 cut(s) 179
Hin1II CATG 2 cut(s) 97, 106
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HpaII CCGG 2 cut(s) 30, 174
Hpy188III TCNNGA 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 18, 120
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 2 cut(s) 97, 106
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 78, 167
LpnPI CCDG 5 cut(s) 9, 31, 43, 54, 81
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 80, 169
MboI GATC 2 cut(s) 78, 167
MboII GAAGA 2 cut(s) 88, 136
MflI RGATCY 1 cut(s) 78
MnlI CCTC 2 cut(s) 146, 170
MseI TTAA 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 2 cut(s) 30, 174
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 12, 18, 120
NdeII GATC 2 cut(s) 78, 167
NlaIII CATG 2 cut(s) 97, 106
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 102
PkrI GCNGC 2 cut(s) 14, 181
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 184
SatI GCNGC 2 cut(s) 13, 180
Sau3AI GATC 2 cut(s) 78, 167
ScrFI CCNGG 1 cut(s) 69
SetI ASST 4 cut(s) 50, 156, 162, 184
SfcI CTRYAG 1 cut(s) 7
SgrAI CRCCGGYG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 92
SsiI CCGC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 91
TauI GCSGC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 184
Tru9I TTAA 1 cut(s) 184
TscAI CASTG 2 cut(s) 22, 136
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 2 cut(s) 22, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.