Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001066

Physical Location & Seq

Genomic Coordinates Reverse (-)

50107198 .. 50108295

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATCTGGAAGCCCACACCTGATGGCAAATTTTCTGTGAAAAGTGCCTATAATAGCATTGTTGATGATGGTCAACCTAGTGGTAGTCTTTGGAAAGGTATCTGGAGCTTAAATATCCATCCTAAATTAAAAATCTTCACTTGGCTCTTTGTTAGAGGGAGGCTGTTGACTAATATGCACCGAGCACAGAGACACCTTACTATGAACCCAAACTGTAAACATTGCCCTGAGGAACCTGAATCTATGATCCATCTTTTCAGGGATTGTCTCATGACTTCTACTGTTTGGAATGAAATTGGAATGCCCGCTAGCATTGCTAGGACTTTCAAGCTTGACTGGAATACTTGGATAGCAGCTAACCTTTTGCAAAAAAACTGTAAGTTTTTGGGATTTGAATGGTCTCATTTGTTCATTTACACCTGTTGGTTTATTTGGAAATGGCGCAACAAGTATATTTTTGATGATGGTTTCCAACGACCTCATAATACTGCTTCCATTATAATCCAGTACATTAGAGAATGGAGCTCTTGTCACATAAACTCTAAGATTATTTCTATCCGTAGAACTGAGATGTTGTGTTGGCAAAAGCCTTCTGTTGGCCAATTCAAATTAAATGTGGATGGATCCCGAACCAATAATGGTTTAATTGGTGCTGGTGGGGTCATAAGAGACAGCTCAAGAATTTGGCATCATGGCTTTATGCAGAACATTGGTAGTGGTGATGTTCTTCAAGCTGAAGCTTGGGGCTTGTTTACAGCTTTGCAGATTGTCATTGAGCTTAAGATCAAGCATATTGCTGTGGAAACTGACTCTGCTACCCTTTTGAATCTAATGATGAGTGCTGACATTGATCTCCATCCTTTGGGTACTCTGCTTTCTAATTGTAAGATTATGCTTACATCTTTTGAATCCTATTCTATTCAGCACATTCATCGAGAGAGAAATATGGTTGCAGATGGTTTAGCCAAAAGAAGTACTGATCAGGAGTTAGGGCTTTGCAGATGTCCTTCCATTCCTCCCTTTGTCTATCAGGCTGTGATGGATGATATTGATGGCATTTCTAGGCCTAGAACCTTTATGTCGTCTGTGATAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

365

Amino Acids

41.96

Weight (kDa)

8.87

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	11 - 96	1e-19	zinc-binding in reverse transcriptase
RVT_3	PF13456	205 - 324	1.1e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60460 AT5G60460
fragaria_vesca	FvH4_3g32770
malus_domestica	MD03G1115300.v1.1 MD11G1132800.v1.1
prunus_persica	Prupe.6G098200_v2.0.a1
pyrus_communis	pycom07g25430 pycom11g10960
rosa_chinensis	RchiOBHm_Chr1g0375461 RchiOBHm_Chr2g0119221 RchiOBHm_Chr4g0396411 RchiOBHm_Chr5g0059851 RchiOBHm_Chr5g0081371 RchiOBHm_Chr6g0270021 RchiOBHm_Chr6g0270251 RchiOBHm_Chr6g0302081 RchiOBHm_Chr7g0218951 RchiOBHm_Chr7g0240951
rosa_laevigata	RLG00000006462 RLG00000035333 RLG00000035500
rosa_multiflora	Rmu_sc0000157.1_g000009 Rmu_sc0000528.1_g000028 Rmu_sc0001781.1_g000033 Rmu_sc0002111.1_g000010 Rmu_sc0008746.1_g000003
rosa_roxburghii	Rroxscaffold_1G00020740
rosa_rugosa	Rorug02G0391200 Rorug03G0124500 Rorug03G0196600 Rorug04G0086700 Rorug05G0326300
rosa_samantha	Rh1AG143200 Rh1AG401700 Rh1DG065800 Rh2AG278900 Rh2BG289800 Rh2DG284900 Rh2DG303900 Rh3DG271100 Rh4AG055500 Rh4AG230800 Rh4BG053600 Rh4CG168000 Rh4DG155500 Rh5AG390800 Rh5BG433600 Rh5CG456700 Rh5DG559500 Rh6BG135800 Rh6BG176800 Rh6CG134200 Rh6DG120500 Rh6DG437300
rosa_wichuraiana	Rw0G006820 Rw1G035660 Rw2G024030 Rw4G005510 Rw5G036770 Rw6G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	862
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	3 cut(s)	241, 618, 631
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	29, 681
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	3 cut(s)	509, 868, 976
AfiI	CCNNNNNNNGG	2 cut(s)	596, 862
AflII	CTTAAG	1 cut(s)	779
AgsI	TTSAA	6 cut(s)	328, 395, 607, 731, 826, 908
AluBI	AGCT	9 cut(s)	108, 331, 356, 525, 675, 734, 740, 758, 778
AluI	AGCT	9 cut(s)	108, 331, 356, 525, 675, 734, 740, 758, 778
Alw21I	GWGCWC	2 cut(s)	187, 527
Alw26I	GTCTC	4 cut(s)	184, 272, 405, 663
AlwI	GGATC	3 cut(s)	241, 618, 631
AoxI	GGCC	2 cut(s)	598, 1064
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	29, 681
AspLEI	GCGC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	731
AsuNHI	GCTAGC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	228
BalI	TGGCCA	1 cut(s)	600
BamHI	GGATCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	187, 527
BbvI	GCAGC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	4 cut(s)	184, 272, 405, 663
BfaI	CTAG	6 cut(s)	78, 309, 318, 1062, 1068, 1096
BfrI	CTTAAG	1 cut(s)	779
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmcAI	AGTACT	1 cut(s)	976
BmiI	GGNNCC	2 cut(s)	234, 625
BmsI	GCATC	1 cut(s)	697
BmtI	GCTAGC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	855
BsaI	GGTCTC	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 862
Bse1I	ACTGG	2 cut(s)	341, 505
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	220, 312
Bse8I	GATNNNNATC	1 cut(s)	855
BseGI	GGATG	4 cut(s)	118, 625, 856, 1048
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	596, 862
BseMI	GCAATG	2 cut(s)	220, 312
BseMII	CTCAG	2 cut(s)	219, 558
BseNI	ACTGG	2 cut(s)	341, 505
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	2 cut(s)	600, 1066
BsiHKAI	GWGCWC	2 cut(s)	187, 527
BslI	CCNNNNNNNGG	2 cut(s)	596, 862
BsmAI	GTCTC	4 cut(s)	184, 272, 405, 663
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	600, 1066
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	2 cut(s)	187, 527
Bsp143I	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	600, 1066
BspCNI	CTCAG	2 cut(s)	220, 559
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	234, 625
BspOI	GCTAGC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	241, 618, 631
BspTI	CTTAAG	1 cut(s)	779
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	220, 312
BsrI	ACTGG	2 cut(s)	341, 505
BssMI	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
Bst4CI	ACNGT	3 cut(s)	215, 283, 377
BstAFI	CTTAAG	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	306, 310
BstDEI	CTNAG	3 cut(s)	228, 543, 567
BstF5I	GGATG	4 cut(s)	118, 625, 856, 1048
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	6 cut(s)	6, 249, 626, 786, 853, 982
BstMAI	GTCTC	4 cut(s)	184, 272, 405, 663
BstMBI	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	600, 1066
BtsCI	GGATG	4 cut(s)	118, 625, 856, 1048
Cac8I	GCNNGC	2 cut(s)	306, 310
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	508, 867, 975
CviAII	CATG	2 cut(s)	271, 692
CviQI	GTAC	3 cut(s)	508, 867, 975
DdeI	CTNAG	3 cut(s)	228, 543, 567
DpnI	GATC	6 cut(s)	5, 248, 625, 785, 852, 981
DpnII	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
EaeI	YGGCCR	1 cut(s)	598
Ecl136II	GAGCTC	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	756
Eco81I	CCTNAGG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	2 cut(s)	274, 695
FatI	CATG	2 cut(s)	270, 691
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	4 cut(s)	105, 632, 843, 1055
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	6 cut(s)	78, 309, 318, 1062, 1068, 1096
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	600, 1066
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	274, 695
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	2 cut(s)	74, 168
HindII	GTYRAC	2 cut(s)	74, 168
HindIII	AAGCTT	2 cut(s)	329, 738
HinfI	GANTC	4 cut(s)	239, 809, 826, 908
HphI	GGTGA	1 cut(s)	731
Hpy166II	GTNNAC	4 cut(s)	74, 168, 218, 753
Hpy188III	TCNNGA	7 cut(s)	7, 103, 271, 627, 678, 935, 983
Hpy8I	GTNNAC	4 cut(s)	74, 168, 218, 753
HpyAV	CCTTC	2 cut(s)	600, 1017
HpyCH4III	ACNGT	3 cut(s)	215, 283, 377
HpyCH4V	TGCA	6 cut(s)	178, 367, 703, 763, 953, 999
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	228, 543, 567
Hsp92II	CATG	2 cut(s)	274, 695
HspAI	GCGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
LmnI	GCTCC	2 cut(s)	105, 522
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	6 cut(s)	78, 309, 318, 1062, 1068, 1096
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	6 cut(s)	5, 248, 625, 785, 852, 981
MboI	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
MboII	GAAGA	2 cut(s)	127, 719
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	187, 527
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	8 cut(s)	29, 125, 294, 602, 608, 645, 681, 880
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	5 cut(s)	149, 153, 223, 489, 1026
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	5 cut(s)	110, 128, 611, 644, 780
Msp20I	TGGCCA	1 cut(s)	600
MspCI	CTTAAG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	274, 695
NlaIV	GGNNCC	2 cut(s)	234, 625
NmuCI	GTSAC	1 cut(s)	530
PagI	TCATGA	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	3 cut(s)	239, 826, 908
PflMI	CCANNNNNTGG	1 cut(s)	862
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	234, 625
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	3 cut(s)	509, 868, 976
RsaNI	GTAC	3 cut(s)	508, 867, 975
SacI	GAGCTC	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	110, 128, 611, 644, 780
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	6 cut(s)	3, 246, 623, 783, 850, 979
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	1 cut(s)	803
SduI	GDGCHC	2 cut(s)	187, 527
SfaNI	GCATC	1 cut(s)	697
SmlI	CTYRAG	2 cut(s)	676, 779
SmoI	CTYRAG	2 cut(s)	676, 779
Sse9I	AATT	8 cut(s)	29, 125, 294, 602, 608, 645, 681, 880
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	6 cut(s)	78, 309, 318, 1062, 1068, 1096
SstI	GAGCTC	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	1066
TaaI	ACNGT	3 cut(s)	215, 283, 377
TaqI	TCGA	1 cut(s)	934
TasI	AATT	8 cut(s)	29, 125, 294, 602, 608, 645, 681, 880
TatI	WGTACW	2 cut(s)	507, 974
TfiI	GAWTC	3 cut(s)	239, 826, 908
Tru1I	TTAA	5 cut(s)	110, 128, 611, 644, 780
Tru9I	TTAA	5 cut(s)	110, 128, 611, 644, 780
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	4 cut(s)	218, 306, 400, 920
TspGWI	ACGGA	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	862
Vha464I	CTTAAG	1 cut(s)	779
XapI	RAATTY	2 cut(s)	29, 681
XspI	CTAG	6 cut(s)	78, 309, 318, 1062, 1068, 1096
ZrmI	AGTACT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.