Rmu_sc0000157.1_g000009

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000157.1
OG0001066
Physical Location & Seq
Reverse (-)
44563 .. 45471
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000157.1_g000009.1.cds

Sequence Viewer

Length: 369 bp
atgaccttgacggtgttgttggcggtggtggaggaaccctccgtgagagatagtggtctgagagggcttcaaagattcgattcctcacgccccggtgtcatggctcctcgtggttcagctactgccacatctggaacgcacagccgtcgtatcggtggaggtggaaactccagctccggaggcatgggtgacagcggcgatggctctagtgctggaaacaacatactcaggttctacaccgacgacgctcctggcttgaagatctcccccaccgtcatgctagtcatgagcctctgcttcatcgacttcatcactgccctccatgtcttcaacaagctctacctccaccgatccattggcgaagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

122

Amino Acids

12.75

Weight (kDa)

7.98

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 2 cut(s) 23, 195
AclWI GGATC 1 cut(s) 345
AgsI TTSAA 3 cut(s) 71, 259, 331
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 119, 174, 337, 365
AluI AGCT 4 cut(s) 119, 174, 337, 365
AlwI GGATC 1 cut(s) 345
AlwNI CAGNNNCTG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 200
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 319
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 93
BfaI CTAG 2 cut(s) 207, 281
BglII AGATCT 1 cut(s) 261
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 2 cut(s) 93, 252
BmiI GGNNCC 2 cut(s) 36, 105
BmrFI CCNGG 2 cut(s) 93, 252
BpiI GAAGAC 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 50, 241
BseRI GAGGAG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 93, 177
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 2 cut(s) 261, 350
BspACI CCGC 2 cut(s) 23, 195
BspCNI CTCAG 2 cut(s) 51, 240
BspEI TCCGGA 1 cut(s) 176
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 36, 105
BspPI GGATC 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 2 cut(s) 261, 350
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 13, 274
BstDEI CTNAG 2 cut(s) 59, 227
BstKTI GATC 2 cut(s) 264, 353
BstMBI GATC 2 cut(s) 261, 350
BstMWI GCNNNNNNNGC 2 cut(s) 180, 201
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 91, 250
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 122
CciI TCATGA 1 cut(s) 285
CseI GACGC 1 cut(s) 254
CviAII CATG 5 cut(s) 100, 184, 277, 286, 323
DdeI CTNAG 2 cut(s) 59, 227
DpnI GATC 2 cut(s) 263, 352
DpnII GATC 2 cut(s) 261, 350
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 103, 187, 280, 289, 326
FaiI YATR 6 cut(s) 101, 185, 224, 278, 287, 324
FatI CATG 5 cut(s) 99, 183, 276, 285, 322
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 2 cut(s) 207, 281
GluI GCNGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 154
HapII CCGG 2 cut(s) 93, 177
HgaI GACGC 1 cut(s) 254
Hin1II CATG 5 cut(s) 103, 187, 280, 289, 326
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 2 cut(s) 75, 80
HpaII CCGG 2 cut(s) 93, 177
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 3 cut(s) 132, 177, 286
Hpy99I CGWCG 3 cut(s) 150, 245, 248
HpyCH4III ACNGT 2 cut(s) 13, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 201
HpyF3I CTNAG 2 cut(s) 59, 227
Hsp92II CATG 5 cut(s) 103, 187, 280, 289, 326
Kpn2I TCCGGA 1 cut(s) 176
Kzo9I GATC 2 cut(s) 261, 350
LmnI GCTCC 3 cut(s) 109, 179, 253
LpnPI CCDG 8 cut(s) 106, 117, 184, 190, 198, 214, 237, 264
MaeI CTAG 2 cut(s) 207, 281
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 263, 352
MboI GATC 2 cut(s) 261, 350
MboII GAAGA 2 cut(s) 271, 319
MflI RGATCY 1 cut(s) 261
MroI TCCGGA 1 cut(s) 176
MseI TTAA 1 cut(s) 367
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 2 cut(s) 93, 177
MspR9I CCNGG 2 cut(s) 93, 252
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 180, 201
NciI CCSGG 1 cut(s) 93
NdeII GATC 2 cut(s) 261, 350
NlaIII CATG 5 cut(s) 103, 187, 280, 289, 326
NlaIV GGNNCC 2 cut(s) 36, 105
NmuCI GTSAC 1 cut(s) 188
PagI TCATGA 1 cut(s) 285
PfeI GAWTC 2 cut(s) 75, 80
PkrI GCNGC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 36, 105
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 261, 350
ScrFI CCNGG 2 cut(s) 93, 252
SetI ASST 8 cut(s) 8, 121, 163, 176, 233, 339, 345, 367
SmiMI CAYNNNNRTG 1 cut(s) 275
SsiI CCGC 2 cut(s) 23, 195
SspMI CTAG 2 cut(s) 207, 281
StyD4I CCNGG 2 cut(s) 91, 250
TaaI ACNGT 2 cut(s) 13, 274
TaqI TCGA 2 cut(s) 78, 303
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 2 cut(s) 75, 80
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 289, 298
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 2 cut(s) 207, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.