FvH4_3g44750

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
37249465 .. 37250816
1352 bp
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UTR
Exon/CDS
Intron
FvH4_3g44750.t1

Sequence Viewer

Length: 690 bp
ATGGCTGAGAACTTTGCTTTCGTTCAGGGGAAGTATAACGGTAGCATCATTACTCTGATGGGGAGGAACTCGATCTTTAACAAAGTGAGGGAGGTGTCTGTGATAGGAGGAAGTGGTGTTTTCAGGTTTGTTAGGGGTTATGCTCTAGCATCCGCTCAGTCGTTCAATGCCTCTAAAATTTGCGCGGAAGATTATGAGTTTGTGAAATCAGTGAACCCCAAGTTTCTCGGTTTAAAGAAAGAAAAACTCACACATATTCGTTTGTATTGGCACGACGTTGTTGATGGTTCTAATCCCTCTGCCGTAACAATAGTGCAACCACCCTCTAACTCCTCCAAAACAAGGTTTGGCCTAATAAGAATGTTCGATAACGCTCTAACCCAAGGGCCCGACCCGAGCTCAAAACTTCTGGGAAGGGCTCAAGGGTTTTACGGGTTTGCTTCACAAGAAGACATTACTTTGTTGTTGTCTCAGAACTTTGCTTTCGTTCATGGGAAGTATAACGGCAGCACCATAACTCTGATGGGGATTAACTCGATCTTCAACAAAGTGAGGGAGCTGTCTGTGATAGGAGGAAGTGGACTTTTCAGGTTTGCTAGGGGTTATGCTCTAGTAACCACTCAGTCGTTCAATGCCTCTAAAAGTGAAGATGCTATAGTGGAGTATAATATCTATGTCTTGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

230

Amino Acids

25.29

Weight (kDa)

9.56

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 1 - 58 3.8e-17 Dirigent-like protein
Dirigent PF03018 84 - 226 2.9e-53 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 155
AccII CGCG 1 cut(s) 185
AciI CCGC 2 cut(s) 153, 185
AcsI RAATTY 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 3 cut(s) 166, 544, 631
AluBI AGCT 2 cut(s) 399, 559
AluI AGCT 2 cut(s) 399, 559
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 474
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 349, 386
ApaI GGGCCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 507
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 386, 387
AvaI CYCGRG 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 390
BanII GRGCYC 3 cut(s) 390, 401, 421
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 519
BccI CCATC 3 cut(s) 52, 278, 517
BceAI ACGGC 2 cut(s) 287, 520
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 3 cut(s) 146, 597, 611
BfmI CTRYAG 1 cut(s) 654
BisI GCNGC 1 cut(s) 508
BlsI GCNGC 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 386, 387
BmiI GGNNCC 1 cut(s) 388
BmsI GCATC 3 cut(s) 54, 158, 640
BpiI GAAGAC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 3 cut(s) 170, 485, 635
BseRI GAGGAG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 351, 388
BsiHKAI GWGCWC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 2 cut(s) 351, 388
BsoBI CYCGRG 1 cut(s) 394
Bsp120I GGGCCC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 390, 401, 421
Bsp143I GATC 2 cut(s) 72, 537
BspACI CCGC 2 cut(s) 153, 185
BspANI GGCC 2 cut(s) 351, 388
BspCNI CTCAG 3 cut(s) 169, 484, 634
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 72, 537
BssT1I CCWWGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 41
BstDEI CTNAG 4 cut(s) 6, 156, 471, 621
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 75, 540
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 2 cut(s) 72, 537
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 519
BstV2I GAAGAC 1 cut(s) 456
BsuRI GGCC 2 cut(s) 351, 388
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 216
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 386, 387
CviAII CATG 1 cut(s) 491
CviJI RGCY 6 cut(s) 5, 351, 388, 399, 419, 559
CviKI_1 RGCY 6 cut(s) 5, 351, 388, 399, 419, 559
DdeI CTNAG 4 cut(s) 6, 156, 471, 621
DpnI GATC 2 cut(s) 74, 539
DpnII GATC 2 cut(s) 72, 537
DraI TTTAAA 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 382
Eco24I GRGCYC 3 cut(s) 390, 401, 421
Eco53kI GAGCTC 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 382
EcoT38I GRGCYC 3 cut(s) 390, 401, 421
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 1 cut(s) 494
FatI CATG 1 cut(s) 490
Fnu4HI GCNGC 1 cut(s) 508
FokI GGATG 1 cut(s) 136
FriOI GRGCYC 3 cut(s) 390, 401, 421
Fsp4HI GCNGC 1 cut(s) 508
FspBI CTAG 3 cut(s) 146, 597, 611
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 508
HaeIII GGCC 2 cut(s) 351, 388
HhaI GCGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
Hpy166II GTNNAC 2 cut(s) 214, 581
Hpy188I TCNGA 3 cut(s) 57, 474, 522
Hpy8I GTNNAC 2 cut(s) 214, 581
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 316, 682
HpyF3I CTNAG 4 cut(s) 6, 156, 471, 621
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 72, 537
LmnI GCTCC 1 cut(s) 556
LpnPI CCDG 4 cut(s) 11, 109, 395, 574
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 3 cut(s) 54, 158, 640
MaeI CTAG 3 cut(s) 146, 597, 611
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 304, 613
MalI GATC 2 cut(s) 74, 539
MbiI CCGCTC 1 cut(s) 155
MboI GATC 2 cut(s) 72, 537
MboII GAAGA 4 cut(s) 200, 461, 532, 659
MhlI GDGCHC 3 cut(s) 390, 401, 421
MluCI AATT 1 cut(s) 177
MseI TTAA 3 cut(s) 78, 233, 531
MvnI CGCG 1 cut(s) 185
NdeII GATC 2 cut(s) 72, 537
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 1 cut(s) 388
PkrI GCNGC 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 388
PspOMI GGGCCC 1 cut(s) 386
PspPI GGNCC 2 cut(s) 386, 387
SacI GAGCTC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 78, 233, 531
SatI GCNGC 1 cut(s) 508
Sau3AI GATC 2 cut(s) 72, 537
Sau96I GGNCC 2 cut(s) 386, 387
SduI GDGCHC 3 cut(s) 390, 401, 421
SetI ASST 7 cut(s) 96, 128, 279, 347, 401, 561, 593
SfaNI GCATC 3 cut(s) 54, 158, 640
SfcI CTRYAG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 1 cut(s) 177
SsiI CCGC 2 cut(s) 153, 185
SspMI CTAG 3 cut(s) 146, 597, 611
SstI GAGCTC 1 cut(s) 401
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 71, 366, 536
TasI AATT 1 cut(s) 177
Tru1I TTAA 3 cut(s) 78, 233, 531
Tru9I TTAA 3 cut(s) 78, 233, 531
TscAI CASTG 1 cut(s) 216
TseI GCWGC 1 cut(s) 507
TspDTI ATGAA 1 cut(s) 479
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XspI CTAG 3 cut(s) 146, 597, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.