Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000726

Physical Location & Seq

Genomic Coordinates Forward (+)

793305 .. 793532

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G010600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGTTCAGAACTTTGCTTTTGTCCAAGGTCAGTTTAATGGCAGCACCATAAGTTTGCTAGGAAGAAATTCAATTTTCAACAAGGTAAGGGAGCTGCCTGTGGTTGGTGGAAGCGGGGCTTTCAGGTTTGCTAGGGGTTATGCTGAGGCAACAACTCACACTTTTGATGGCACAACCACCGGTGATGCTACGGTGGAGTACAATATCTATGTGTTGCATTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

76

Amino Acids

8.28

Weight (kDa)

6.7

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55210 AT1G55210 AT1G58170 AT3G13660
fragaria_vesca	FvH4_3g44750 FvH4_3g44752 FvH4_3g44790 FvH4_3g44800
malus_domestica	MD03G1010600.v1.1 MD03G1010700.v1.1 MD11G1012400.v1.1 MD11G1012500.v1.1
prunus_persica	Prupe.6G010300_v2.0.a1 Prupe.6G010500_v2.0.a1 Prupe.6G010600_v2.0.a1
pyrus_communis	pycom03g00940 pycom03g00950 pycom11g00810
rosa_chinensis	RchiOBHm_Chr5g0080641 RchiOBHm_Chr5g0081441 RchiOBHm_Chr5g0081451 RchiOBHm_Chr5g0081461
rosa_laevigata	RLG00000036875 RLG00000036935 RLG00000036937 RLG00000036938 RLG00000036940 RLG00000036941
rosa_multiflora	Rmu_co8102938.1_g000001 Rmu_co8330035.1_g000001 Rmu_sc0001783.1_g000013 Rmu_sc0002380.1_g000004 Rmu_sc0007768.1_g000024 Rmu_sc0007768.1_g000032 Rmu_sc0009187.1_g000005 Rmu_sc0028488.1_g000001 Rmu_sc0038780.1_g000002 Rmu_sc0038780.1_g000004
rosa_roxburghii	Rroxscaffold_1G00002060 Rroxscaffold_1G00002080 Rroxscaffold_1G00002100 Rroxscaffold_1G00002760
rosa_rugosa	Rorug05G0448400 Rorug05G0470800 Rorug05G0476400 Rorug05G0476500 Rorug05G0476500 Rorug05G0476600 Rorug05G0476600
rosa_samantha	Rh5AG524100 Rh5AG527800 Rh5AG527900 Rh5AG528100 Rh5BG546400 Rh5BG552300 Rh5BG552500 Rh5BG552600 Rh5BG552700 Rh5CG569600 Rh5CG574900 Rh5CG575100 Rh5CG575200 Rh5CG575300 Rh5DG536500 Rh5DG556600 Rh5DG562000 Rh5DG562300 Rh5DG562500
rosa_wichuraiana	Rw5G048620 Rw5G049090 Rw5G049110 Rw5G049120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	72, 79
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	42, 94
ApoI	RAATTY	1 cut(s)	67
AsiGI	ACCGGT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	54, 81
BccI	CCATC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	59, 132
BisI	GCNGC	2 cut(s)	43, 95
BlsI	GCNGC	2 cut(s)	44, 96
BmsI	GCATC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	54, 81
BshTI	ACCGGT	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	54, 81
Cfr10I	RCCGGY	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	199
CspAI	ACCGGT	1 cut(s)	179
CviJI	RGCY	2 cut(s)	94, 119
CviKI_1	RGCY	2 cut(s)	94, 119
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaiI	YATR	3 cut(s)	50, 141, 210
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	43, 95
Fsp4HI	GCNGC	2 cut(s)	43, 95
FspBI	CTAG	2 cut(s)	59, 132
GluI	GCNGC	2 cut(s)	43, 95
HapII	CCGG	1 cut(s)	180
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	9
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	3 cut(s)	109, 111, 193
Lsp1109I	GCAGC	2 cut(s)	54, 81
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	59, 132
MboII	GAAGA	1 cut(s)	75
MluCI	AATT	2 cut(s)	67, 72
MnlI	CCTC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	67
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	44, 96
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	2 cut(s)	43, 95
SetI	ASST	4 cut(s)	31, 87, 96, 128
SfaNI	GCATC	1 cut(s)	175
SgeI	CNNG	8 cut(s)	38, 71, 94, 110, 127, 136, 144, 192
SgrAI	CRCCGGYG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	67, 72
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	59, 132
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	2 cut(s)	67, 72
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseI	GCWGC	2 cut(s)	42, 94
XapI	RAATTY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	2 cut(s)	59, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.