Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000726

Physical Location & Seq

Genomic Coordinates Reverse (-)

86688809 .. 86689417

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036937

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTAGAATCCTTCCCACCTCAGCATTCCGATTGCTCATAATCTCTTCCCTTCTGACTTCCTTTTCCATAATTTCTGCGGAAGATCATGAGTTTGTGAAATCCATGGACCCCGAGCTTTTCGGTTTTACCCATTTTCGCCTGTACTGGCACGAAGTTGTTGATGGTCCTAATCCCTCTGCCGTAACAATACTGCAAACACCCTCCCAGACAAGCTTCGGCCTGATAAGAATGATCGACAACCGGCTAACCCTAGGCCCCGAACGGAGCTTGAAATTTGTAGCAAGGGCTCAAGGGTTTCATGGATGTGCTTCACAAGAAGACATTAGCCTGTTGATGGCTCAGAACTGTGTTTTCATTCAGGGGAAGTATAACGGTAGCACCATAACCCTGATGGGGAGGAACCCAGTCTTCAACAAAGTGAGGGAGCTGTCTGTATCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

149

Amino Acids

16.54

Weight (kDa)

7.86

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	44 - 146	8.2e-33	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55210 AT1G55210 AT1G58170 AT3G13660
fragaria_vesca	FvH4_3g44750 FvH4_3g44752 FvH4_3g44790 FvH4_3g44800
malus_domestica	MD03G1010600.v1.1 MD03G1010700.v1.1 MD11G1012400.v1.1 MD11G1012500.v1.1
prunus_persica	Prupe.6G010300_v2.0.a1 Prupe.6G010500_v2.0.a1 Prupe.6G010600_v2.0.a1
pyrus_communis	pycom03g00940 pycom03g00950 pycom11g00810
rosa_chinensis	RchiOBHm_Chr5g0080641 RchiOBHm_Chr5g0081441 RchiOBHm_Chr5g0081451 RchiOBHm_Chr5g0081461
rosa_laevigata	RLG00000036875 RLG00000036935 RLG00000036937 RLG00000036938 RLG00000036940 RLG00000036941
rosa_multiflora	Rmu_co8102938.1_g000001 Rmu_co8330035.1_g000001 Rmu_sc0001783.1_g000013 Rmu_sc0002380.1_g000004 Rmu_sc0007768.1_g000024 Rmu_sc0007768.1_g000032 Rmu_sc0009187.1_g000005 Rmu_sc0028488.1_g000001 Rmu_sc0038780.1_g000002 Rmu_sc0038780.1_g000004
rosa_roxburghii	Rroxscaffold_1G00002060 Rroxscaffold_1G00002080 Rroxscaffold_1G00002100 Rroxscaffold_1G00002760
rosa_rugosa	Rorug05G0448400 Rorug05G0470800 Rorug05G0476400 Rorug05G0476500 Rorug05G0476500 Rorug05G0476600 Rorug05G0476600
rosa_samantha	Rh5AG524100 Rh5AG527800 Rh5AG527900 Rh5AG528100 Rh5BG546400 Rh5BG552300 Rh5BG552500 Rh5BG552600 Rh5BG552700 Rh5CG569600 Rh5CG574900 Rh5CG575100 Rh5CG575200 Rh5CG575300 Rh5DG536500 Rh5DG556600 Rh5DG562000 Rh5DG562300 Rh5DG562500
rosa_wichuraiana	Rw5G048620 Rw5G049090 Rw5G049110 Rw5G049120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	337, 396
AgsI	TTSAA	2 cut(s)	274, 415
AluBI	AGCT	4 cut(s)	118, 216, 270, 430
AluI	AGCT	4 cut(s)	118, 216, 270, 430
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	220, 256
ApoI	RAATTY	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	109, 167, 257
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	109, 167
AvrII	CCTAGG	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	327, 403
BbvCI	CCTCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	158, 331, 388
BceAI	ACGGC	1 cut(s)	167
BfaI	CTAG	2 cut(s)	6, 254
BlnI	CCTAGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	109, 167
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	109, 167, 257
BmiI	GGNNCC	3 cut(s)	111, 259, 404
BmrI	ACTGGG	1 cut(s)	401
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	2 cut(s)	327, 403
Bpu10I	CCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	105, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 396
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	152, 407
BseDI	CCNNGG	2 cut(s)	105, 253
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	337, 396
BseMII	CTCAG	2 cut(s)	36, 356
BseNI	ACTGG	2 cut(s)	152, 407
BshFI	GGCC	2 cut(s)	222, 258
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	337, 396
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	222, 258
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	85, 234
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	2 cut(s)	222, 258
BspCNI	CTCAG	2 cut(s)	35, 355
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	111, 259, 404
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	152, 407
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	105, 253
BssMI	GATC	2 cut(s)	85, 234
BssT1I	CCWWGG	2 cut(s)	105, 253
Bst4CI	ACNGT	2 cut(s)	350, 377
Bst6I	CTCTTC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	22, 342
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	88, 237
BstMBI	GATC	2 cut(s)	85, 234
BstV2I	GAAGAC	2 cut(s)	327, 403
BsuRI	GGCC	2 cut(s)	222, 258
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	109, 167, 257
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	89, 106, 302
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	22, 342
DpnI	GATC	2 cut(s)	87, 236
DpnII	GATC	2 cut(s)	85, 234
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	105, 253
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	109, 167
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	105, 253
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	105, 253
FaeI	CATG	3 cut(s)	92, 109, 305
FaiI	YATR	7 cut(s)	41, 71, 90, 107, 303, 372, 386
FatI	CATG	3 cut(s)	88, 105, 301
FokI	GGATG	1 cut(s)	318
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	2 cut(s)	6, 254
HaeIII	GGCC	2 cut(s)	222, 258
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	3 cut(s)	92, 109, 305
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	32, 57, 345
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	23, 62
HpyCH4III	ACNGT	2 cut(s)	350, 377
HpyCH4V	TGCA	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	22, 342
Hsp92II	CATG	3 cut(s)	92, 109, 305
Kzo9I	GATC	2 cut(s)	85, 234
LmnI	GCTCC	2 cut(s)	267, 427
LpnPI	CCDG	9 cut(s)	133, 155, 221, 236, 257, 344, 347, 404, 420
MaeI	CTAG	2 cut(s)	6, 254
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	87, 236
MboI	GATC	2 cut(s)	85, 234
MboII	GAAGA	4 cut(s)	39, 95, 332, 403
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	2 cut(s)	72, 275
MnlI	CCTC	5 cut(s)	31, 187, 214, 393, 417
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	85, 234
NlaIII	CATG	3 cut(s)	92, 109, 305
NlaIV	GGNNCC	3 cut(s)	111, 259, 404
PagI	TCATGA	1 cut(s)	88
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	111, 259, 404
PspPI	GGNCC	3 cut(s)	109, 167, 257
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	85, 234
Sau96I	GGNCC	3 cut(s)	109, 167, 257
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	5 cut(s)	23, 120, 218, 272, 432
SinI	GGWCC	2 cut(s)	109, 167
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	72, 275
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	2 cut(s)	6, 254
StyI	CCWWGG	2 cut(s)	105, 253
TaaI	ACNGT	2 cut(s)	350, 377
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	72, 275
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	9
TspDTI	ATGAA	2 cut(s)	290, 346
TspGWI	ACGGA	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	109, 167
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmaJI	CCTAGG	1 cut(s)	253
XspI	CTAG	2 cut(s)	6, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.